Vairimorpha necatrix: VNE69_06197
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Entry
VNE69_06197 CDS
T10154
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4 (CPFS4)
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
vnx Vairimorpha necatrix
Pathway
vnx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vnx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
VNE69_06197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vnx03021
]
VNE69_06197
03019 Messenger RNA biogenesis [BR:
vnx03019
]
VNE69_06197
Transcription machinery [BR:
vnx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
VNE69_06197
Messenger RNA biogenesis [BR:
vnx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
VNE69_06197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf-CCCH_2
Torus
zf_CCCH_4
zf-CCCH_3
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
90541694
NCBI-ProteinID:
XP_065330029
UniProt:
A0AAX4JD53
LinkDB
All DBs
Position
6:complement(1049906..1050379)
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AA seq
157 aa
AA seq
DB search
MNNLKFDFEDYVENQLGLKEEEDIYCDAYQTNSCYNPNCDKQHIKLATSVICKHWLRGLC
KKGKKCEFIHEYDLKKMPQCYFFGKLGECTNPECFYLHSVNKRKECSWYNRGFCRHGSLC
KNRHVRKKMCYNYFLGFCIKGPLCEFGHPKSYLFRIQ
NT seq
474 nt
NT seq
+upstream
nt +downstream
nt
atgaataatcttaaatttgatttcgaagattatgttgagaaccaacttggtcttaaagaa
gaagaagacatctactgtgacgcataccagacaaattcatgttacaatcccaactgtgac
aagcaacacattaaattagccacatctgtgatttgtaagcactggctcaggggactgtgt
aaaaaaggaaagaaatgtgaatttattcacgaatacgatcttaagaaaatgccccagtgc
tacttctttggtaaacttggcgagtgtacaaatccagagtgtttttatcttcactctgtg
aataaaagaaaagaatgttcttggtacaacagaggattctgtagacatggatctttatgt
aaaaatcgacatgttagaaagaaaatgtgttataattatttcttagggttttgtattaaa
ggaccactttgtgaatttggtcatcccaaatcgtatctctttagaatacaatag
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