Vairimorpha necatrix: VNE69_07152
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Entry
VNE69_07152 CDS
T10154
Name
(RefSeq) ATP-dependent RNA helicase SKI2-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
vnx Vairimorpha necatrix
Pathway
vnx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VNE69_07152
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnx03019
]
VNE69_07152
Enzymes [BR:
vnx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VNE69_07152
Messenger RNA biogenesis [BR:
vnx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
VNE69_07152
mRNA degradation factors
3'-5' decay
Ski complex
VNE69_07152
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
DEXQc_Suv3
Helicase_C
Motif
Other DBs
NCBI-GeneID:
90541908
NCBI-ProteinID:
XP_065330230
UniProt:
A0AAX4JDJ3
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All DBs
Position
7:830995..833595
Genome browser
AA seq
866 aa
AA seq
DB search
MNAKKNYKEVTHSINVDKNWIPKDYAEVVDESILNISFTPDNFQKQSFYFLSKQESVFVA
AHTSAGKTLVAEYAICLSEKSNLRTIYTSPIKALSNQKYYDFKQKFDDVGIITGDVQVNP
SANCLIMTTEILRNLIYKNNDILHNTRYIVFDEVHYINDQERGVVWEECIIMMPKHITLV
LLSATIPNSKEFSDWVGRTNNRIIYIMSTDKRPVPLEHLIYSDREVYSISDQPNVKPLSN
IKTKIIPYAKKNTPTGRFRVLELANFVVRKKLVPSIFFCFSRRKCETLLEELSSLDLTTI
KEKKDINEFLRKALEQLPEVDRSLPQVLKLKKYASLGIMIHHGALLPFIKECVEILFSLN
LIKILIATETFAMGVNMPAKCVAFLSLSKIDGDNFRNLTTGEYTQMSGRAGRRGMDRIGT
VLIADEKVPSLHSIKRVIEGTPISLNSQFRLSFGLILIALRSNVKVEDLMKKSYKEHFKQ
KNENKDLYNLVELETISEPDCEDIISYVKILKFIAESNKKLLMKYKLAKENDFVLLYNND
VVQIKNINEDGSCTVIKQENQDIENLVAQLNLKNNLLMSEELLRLPHTIYQASKLSKFKI
SEIFCILKDGKPWFDYELKNVEDFLLLKKLKESYDHLTKLKCMNCEHFVEHYVNTVQFLS
AQEEIARIKLKYSINNLDMIDEYNNRIKFLVKNNFFDEHVTLKGRVAAEIRTVNEILSTE
MIFDNEFKNFSPEIIVSLFSSMIFEEEIDEFKYSDELDEGVSRLLYHFEKLSKDIDDFFI
PPFKLLNFSIMQAVLDWCHKESLQSIVNKYQISEGSFVRLILRLDECCREMVNATILIGD
KDLENKFEEASKLLKRDIVFLPSLYL
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaaaaaaaaattataaagaagtcacacattctataaatgtagacaaaaactgg
ataccaaaagactacgccgaagttgtagatgaatcaattcttaacatttcttttactccc
gataattttcagaaacagtctttttattttttatcaaaacaagaatctgttttcgttgct
gctcacacaagcgcaggaaagactttggtggccgagtacgccatttgtttatcagaaaaa
tcaaatttaagaacaatttatacaagtccaattaaagcactgagcaatcaaaagtactac
gattttaagcagaaatttgatgatgtgggaattatcactggagatgtacaagtcaatccg
tcagcaaattgcctaattatgaccactgaaattcttagaaatttaatttataaaaataac
gacattttacacaatactagatacattgtatttgatgaagtacattacatcaatgaccaa
gaaagaggggtagtatgggaagaatgtataataatgatgcctaaacacatcactctagta
cttcttagtgctactattccaaattctaaagaattcagtgattgggtaggcagaacaaat
aatcgaataatttatattatgtcaacagacaaaagacctgttcctttagaacacttgatt
tattcggacagagaagtttactcaatttccgatcaaccaaatgtaaagcctttatcaaat
ataaaaaccaagattattccctacgcaaagaaaaatacgccgactggccgatttagagtt
ctagagttagcaaattttgtagtaagaaaaaagttggtcccgtcaatatttttctgcttt
tctagacggaaatgcgaaactttactcgaagaattgagcagcttggatttgacgactata
aaagaaaaaaaagatatcaacgaatttctacgtaaggctctagagcaactacccgaagtg
gatagatctttgccacaagtacttaagctgaagaaatacgcaagtttaggcataatgatc
catcatggtgctcttctgccttttataaaagaatgtgtagaaattttattttctttgaat
ttgataaaaattttaatagccacagaaacttttgctatgggcgtgaatatgcccgcgaaa
tgtgtagcttttctttctctcagcaaaattgacggcgataattttagaaatttgactact
ggcgaatacacgcaaatgagtggcagagcgggaagaagaggaatggatagaattggaact
gtattaatcgccgatgaaaaggtcccgagccttcattccattaaaagagtcatagagggt
actcctatttctctaaatagtcaattcagacttagtttcggtctaattctcatagcttta
cgatcgaatgtaaaagtagaagatttaatgaaaaaaagctacaaagaacattttaaacaa
aaaaacgaaaacaaagatttgtacaacctcgtagaactagaaacaattagcgaaccagat
tgtgaagatataatttcttatgtaaaaattttaaaatttattgccgagtcaaataaaaag
cttctaatgaaatataaactagcaaaagaaaatgattttgttttgctttacaacaatgac
gttgttcaaataaaaaacatcaatgaagacggatcgtgtaccgtcataaaacaagaaaat
caagatattgaaaatttggtcgcccaattaaatttaaaaaataatttgctgatgagcgag
gaattgttaagacttccccatacaatttatcaagcatcaaaattgagtaaatttaagatt
tccgaaattttttgcattcttaaagatggcaagccttggttcgattacgaactaaaaaat
gtagaagattttttattattaaaaaaattgaaagaatcttacgaccatcttacaaaatta
aaatgtatgaattgtgagcattttgtagaacattatgttaacactgtacaatttttatca
gctcaagaagaaattgcaagaataaaactcaagtatagtattaataatttggatatgatc
gacgaatataacaatagaatcaagtttcttgtaaaaaataatttttttgatgaacacgtg
actcttaaaggaagagttgcggccgaaatacgaacagtaaatgaaattttatctactgaa
atgatttttgataatgaatttaaaaatttttcgcctgaaattatagtttcacttttttca
agtatgatatttgaagaagaaatcgacgaatttaaatattccgacgaactggacgaagga
gtttctcgccttctttatcattttgaaaaattatcgaaagacattgacgatttttttatt
ccgccgtttaaattattaaatttctcaataatgcaagcagttttagactggtgccacaaa
gaatccttgcaaagcattgtcaacaagtatcaaatttctgaaggatcttttgtaagatta
attctcagattagacgaatgttgcagagaaatggtcaatgcgacgattttaatcggagat
aaagatttagaaaataaattcgaagaagcttctaagcttttaaaaagagatattgtattt
ttaccgagtttatatttataa
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