Vairimorpha necatrix: VNE69_12198
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Entry
VNE69_12198 CDS
T10154
Name
(RefSeq) ATP-dependent RNA helicase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
vnx Vairimorpha necatrix
Pathway
vnx03013
Nucleocytoplasmic transport
vnx03015
mRNA surveillance pathway
vnx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vnx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
VNE69_12198
09122 Translation
03013 Nucleocytoplasmic transport
VNE69_12198
03015 mRNA surveillance pathway
VNE69_12198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnx03019
]
VNE69_12198
03041 Spliceosome [BR:
vnx03041
]
VNE69_12198
Enzymes [BR:
vnx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VNE69_12198
Messenger RNA biogenesis [BR:
vnx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
VNE69_12198
Spliceosome [BR:
vnx03041
]
Complex C
Other components
EJC/TREX
VNE69_12198
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
VNE69_12198
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
UvrD-helicase
Bmp
PhoH
GvpD_P-loop
AAA_19
Motif
Other DBs
NCBI-GeneID:
90543060
NCBI-ProteinID:
XP_065331358
UniProt:
A0AAX4JI78
LinkDB
All DBs
Position
12:882778..883971
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AA seq
397 aa
AA seq
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MSDDELIEYREDLQNFKKTQPKIKSSAQFKDFLLRDELMESIKDAAFEHPSEVQQMAIPK
AILGQDILCQAKSGTGKTAVFVLSTLQQLKVVDKETVILVIVHTKEMAEQVKMEYLRFGK
KMENVTVGAVYGGNDIEEDIKLLSSSSPSVLVGTPGRLAEIVRRRALNLKHVKYFVMDEC
DKVIGDLEMRNDTQEIFVNTPRNKQTLMFTATLNEYTTVECKRFLDNPFIVKVDDESKLT
LYGLKQSYLEVDQKEKLNRLADLLNSTTYNQAIIFTASKIMPVKICDFLKNKGLVVMDLH
AGLKSTERKERLVKFKKYEYRIMVTTDLMSRGIDVQDVNFVINYDMPDSPETYLHRVGRA
GRFETEGQAVSFICSEEDSIKLNEIQSRFEISISKIE
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgacgaattgatcgaatatcgtgaagatctacaaaattttaagaaaactcaa
cctaaaatcaagtcatcagcccaattcaaagattttttactacgtgacgaactcatggaa
tctataaaagatgccgcctttgaacaccccagtgaagtccaacaaatggccataccaaaa
gcaattctaggccaggacattttatgtcaagcaaaaagtggtactggtaaaacagccgtc
tttgttttgtcaactttacaacaactaaaagttgtagacaaagaaactgtcattttagta
attgtccatactaaagaaatggcagaacaagtcaagatggaatatttaagatttggtaag
aaaatggaaaatgtcactgtaggagcagtttatggcgggaatgatatcgaagaagatatc
aaattattaagctcgtcttctccttctgtactagttggtactccagggagactggcagaa
attgtaagacgccgtgctttgaatttaaaacatgtcaaatatttcgtaatggacgaatgt
gacaaagtaataggagatcttgaaatgagaaatgatacacaagaaatatttgtcaatact
ccgaggaataaacagacactaatgtttactgccactttgaacgaatatactactgtagaa
tgtaaaagattccttgataatccatttatcgtcaaagtcgacgacgagtcaaaattaact
ctttacgggttaaaacagtcttatttggaagtagaccagaaggaaaaacttaacagactc
gccgacttactaaattccactacatacaatcaggcaatcatttttactgctagtaaaatt
atgcctgttaaaatatgcgattttttgaaaaataaaggactagtcgtcatggacttgcac
gcaggactaaaatctacagaaagaaaagagagacttgttaaatttaagaaatatgaatat
agaattatggtcactactgacttaatgtctagggggattgatgtacaagatgtgaatttt
gtgataaattatgatatgccagattcgcctgaaacttatctacatagagtcggacgagct
gggagatttgagactgaagggcaagctgtgtcatttatttgtagtgaggaagatagtata
aaacttaatgagatacaaagcagatttgaaatatcaataagtaaaattgaataa
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