Candidatus Vesicomyidisocius calyptogenae: COSY_0132
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Entry
COSY_0132 CDS
T00530
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vok
Candidatus Vesicomyidisocius calyptogenae
Pathway
vok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COSY_0132 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vok03019
]
COSY_0132 (rhlE)
Enzymes [BR:
vok01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COSY_0132 (rhlE)
Messenger RNA biogenesis [BR:
vok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
COSY_0132 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Amidohydro_1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BAF61266
UniProt:
A5CXP1
LinkDB
All DBs
Position
141728..142996
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AA seq
422 aa
AA seq
DB search
MSFSKLGLSDSILKAIEQKGYSEPSPIQNQSIPAILNGKDVMAAAQTGTGKTACFALPIL
EILSKKKPTKSNQVRTLILTPTRELAIQVSDSVTTYGKYLPLKSSVVFGGVKINPQMQRL
CSGVDILVATPGRLLDLYSQNSVKFDMLEIVVFDEADRMLDMGFINDIKRILKILPSKKQ
TLMFSATFSNKILTLAKSLVNNPVEISVTPRNSTVKAIKQWIHPVDKSKKHALLTHLIQE
HNWHQVLVFSRTKYGANRIVNQLEKKKIRATAIHSNKSQGARTRALLDFKNHEVNVLVAT
DIAARGIEINQLPHVINFDLPYVPEDYVHRIGRTGRAGSKGEAISLVSADEAKQLFDVEC
LIQNKLDRVMVEGFVPDHNLPESGKKLLSPKNRNFKNSKSRNRLRYGKNSSFKKINLTMK
NS
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttctaaattaggtttatctgattcaattcttaaggctatcgagcagaaagga
tatagtgagccatcaccaatacagaatcaatcgatacctgctattttaaatggtaaggat
gtcatggcagctgcccaaacgggaacgggaaaaacagcatgttttgccttgcctattctc
gaaatattatccaaaaaaaaacccacaaaatccaatcaggttcgtacattgattctaact
ccaacgcgtgaattagctatacaagttagtgatagtgtaacgacttatggtaagtattta
cctcttaaatcaagtgtggtgtttggtggtgtgaagattaatccccaaatgcaaagattg
tgttcaggtgttgatattttagtcgctacgccaggtaggttattagatttgtattctcaa
aattctgtgaaatttgatatgctagaaatagttgtatttgatgaggcagatagaatgtta
gatatgggttttattaacgatattaagagaattttaaagattttaccgtcaaaaaagcaa
acactcatgttttcagctactttttctaataagattttaacattagcaaaaagtttggtt
aacaatcctgtagaaatatcagttactccgagaaattctaccgttaaagcaataaagcaa
tggattcatcctgttgataaatccaagaaacatgcattattaactcatcttattcaagaa
cataattggcaccaggttctagtgtttagtcgtacgaaatatggtgcaaatcgtattgtc
aatcaattagaaaagaaaaagattagagcaactgcgattcatagtaataaaagtcagggt
gcgcgtacaagagctttgttagactttaaaaatcacgaagtgaacgtattagtggcaacc
gatattgctgcaagaggtattgaaattaatcaattaccacatgttattaattttgattta
ccgtatgtaccagaagattatgtacatcgtattggtcgtacaggtcgtgctggctcaaaa
ggtgaggcaatttcattagttagtgctgatgaagctaagcaattgtttgatgttgaatgc
ttaattcaaaataaattagatcgtgtaatggtagaaggttttgttccagatcacaacctg
ccagagtcaggtaaaaaattattgtcaccaaaaaatagaaattttaagaattccaaaagt
cgcaatcgactcagatatggcaaaaatagtagtttcaagaaaataaacttaacaatgaaa
aattcataa
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