Candidatus Vesicomyidisocius calyptogenae: COSY_0136
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Entry
COSY_0136 CDS
T00530
Symbol
holA
Name
(GenBank) DNA polymerase III delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
vok
Candidatus Vesicomyidisocius calyptogenae
Pathway
vok03030
DNA replication
vok03430
Mismatch repair
vok03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vok00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
COSY_0136 (holA)
03430 Mismatch repair
COSY_0136 (holA)
03440 Homologous recombination
COSY_0136 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vok03032
]
COSY_0136 (holA)
03400 DNA repair and recombination proteins [BR:
vok03400
]
COSY_0136 (holA)
Enzymes [BR:
vok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
COSY_0136 (holA)
DNA replication proteins [BR:
vok03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
COSY_0136 (holA)
DNA repair and recombination proteins [BR:
vok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
COSY_0136 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
DNA_pol3_delta_C
DUF3861
ComR_TPR
RPM2
DUF6514
Motif
Other DBs
NCBI-ProteinID:
BAF61270
UniProt:
A5CXP5
LinkDB
All DBs
Position
complement(146457..147476)
Genome browser
AA seq
339 aa
AA seq
DB search
MKIKPQQLNTQLANKLDAIYFIFGAEILLIEQSLAQIKKAAKQKKFDEKVSFEIDSNFDW
NQIFEEISTTSLFSPKRIIECRLKTGKIGIKGANNLVEIVNTLPNNILLIVSTGKLNIAQ
QKSKWFKILEQTGSLIQHFEVQNNHLVDWITKQMAELGLKDNIEIAQNIAFCTEGNLTAS
MQAIQKLKIAYPNGKINTQEYLKQANQQSKYTVYDLIDAALFGNSNQVNKIYQTLISNTI
MPIQLSHALYLEIKSITEMSIELRQVKDTNIVLKNHQVWNTRKPIITNALKHHSYQHFQK
ILLSLGCIDRSIKNMDNLNVIDELHTLLLSLAGEIQWTQ
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattaaacctcaacaacttaatactcaactagctaacaaacttgatgctatttat
tttatttttggtgctgaaatattactcattgaacaaagtttagcacaaataaaaaaagca
gcaaaacaaaaaaagtttgatgaaaaagtaagttttgaaattgatagtaactttgactgg
aatcagatttttgaagaaatctcaactacctcacttttttcaccaaaacgtattattgaa
tgccgattaaaaacaggtaaaattggtattaaaggtgctaataacctagttgaaattgtc
aacactttacccaataatattttactaattgtatctactggaaaattaaacatagcacaa
caaaaaagcaaatggttcaaaatactagaacaaactggtagtcttatccagcattttgaa
gtacaaaataatcatttagttgattggattacaaaacaaatggcagaattagggcttaag
gataatatagaaattgcacaaaatatcgctttttgcacagaaggtaatttgactgcctct
atgcaagcaattcaaaaactaaaaatagcctacccaaatggcaaaattaatactcaagaa
tatcttaaacaagctaatcaacaatctaaatatactgtttatgatttaattgatgcagct
ttatttggtaatagtaatcaagttaataaaatttatcaaactttaatctctaatacaatc
atgccaattcaactaagccatgctttatacctagaaattaaatcaataactgaaatgtca
attgagcttagacaagttaaagatactaacatagttttgaaaaaccatcaagtgtggaac
acaagaaaacctattattaccaatgcattaaagcatcattcttatcagcactttcaaaaa
atattattatcactaggatgtattgaccgttcaatcaaaaacatggataatcttaatgtg
attgatgaactacatacattactactaagtttagctggggaaatacaatggactcaataa
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