Candidatus Vesicomyidisocius calyptogenae: COSY_0194
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Entry
COSY_0194 CDS
T00530
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
vok
Candidatus Vesicomyidisocius calyptogenae
Pathway
vok03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vok00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
COSY_0194 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vok03021
]
COSY_0194 (rpoA)
03400 DNA repair and recombination proteins [BR:
vok03400
]
COSY_0194 (rpoA)
Enzymes [BR:
vok01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
COSY_0194 (rpoA)
Transcription machinery [BR:
vok03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
COSY_0194 (rpoA)
DNA repair and recombination proteins [BR:
vok03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
COSY_0194 (rpoA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
BAF61324
UniProt:
A5CXI9
LinkDB
All DBs
Position
193440..194420
Genome browser
AA seq
326 aa
AA seq
DB search
MQGSARDFLKPKLVESSQTGVNEFKVILEPLERGFGHTLGNAIRRTLLSSMTGFAVTEVV
IDGVMHEFSTIDGVQEDVLDILLNLKEVSVVLNTVETAQVVIDKKGPCEITVADIETNGI
DITTFNPDKVIATINDEGHMRMTLKITAGIGYDAAASRTDEASSIGGMQLDASFSPIKRV
SFTVDAARVKQKVNLDKLNIMIETNGSVNAEVAIKRVATILQEQLSSFVELELVEEEVSL
PTSEDFDPQLLAAVDELELTVRSANCLKAEQIYYIGDLIQKSEQDLLRTPNLGRKSLNEI
KEVLTEKGLSLGTNIENWPPVDLMSE
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggtagtgcaagagattttttaaagccaaagctagttgagtcttctcaaactggt
gttaatgagttcaaagtcattcttgaacctcttgaacggggttttggtcatactttaggt
aacgctataagaagaacgttgttgtcttctatgacgggttttgctgtgactgaagttgta
attgatggggttatgcatgaattttctacaattgatggcgttcaagaagatgtattagat
attttacttaatcttaaagaggtgtcagttgtattaaatacagttgaaaccgcacaagtt
gttattgacaagaaaggtccgtgtgaaattacagtagctgatattgagactaatggtatt
gatattacgacattcaatcctgataaggttattgcaacaattaatgatgaaggtcatatg
cgtatgacacttaaaattactgctggtattggttatgatgctgctgcgtcacgtactgat
gaagcatcaagtattggtggtatgcagttggatgcaagtttttcacctattaaacgcgtt
agttttacggtagatgcggcacgtgttaagcagaaagttaatcttgataaattaaatatt
atgattgagactaatggttcagttaatgcggaagttgctattaagcgtgtagcaacaatc
ttacaagaacaattgtcttcatttgttgagttagagctggtcgaggaagaagtatcatta
ccaacatcagaagattttgatccacagttattagcagcagtagatgagttagaattaacc
gtacgtagtgcgaactgcttaaaggcagaacagatttattatattggtgatttaatccaa
aaatctgaacaagatttactaagaactcctaatttaggtcgtaaatcacttaatgaaatt
aaagaagtattaactgaaaaagggctttctttaggtacaaatattgaaaattggccacca
gttgatttaatgagtgaataa
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