Candidatus Vesicomyidisocius calyptogenae: COSY_0406
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Entry
COSY_0406 CDS
T00530
Name
(GenBank) conserved hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vok
Candidatus Vesicomyidisocius calyptogenae
Pathway
vok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COSY_0406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vok03019
]
COSY_0406
03009 Ribosome biogenesis [BR:
vok03009
]
COSY_0406
Enzymes [BR:
vok01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
COSY_0406
Messenger RNA biogenesis [BR:
vok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
COSY_0406
Ribosome biogenesis [BR:
vok03009
]
Prokaryotic type
rRNA processing factors
COSY_0406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BAF61525
UniProt:
A5CWY4
LinkDB
All DBs
Position
complement(413763..415484)
Genome browser
AA seq
573 aa
AA seq
DB search
MNHILINATHSEEIRVGIIKNKKLTGLNIETSLNKKTKGNIYRGKISRIEQSLEAAFVDY
GKEKQGFLPFKEIAETLYNNTKTEGEKLTISDVLKEGQKIIVQIEKEERGNKGAALSTYI
NLAGAYMILMPNNPKSHGISRQIVSSDRQSLKEIINRIILPKHSGLIIRTAGSGKSFEEL
QWEVDYLTDLWKSINTMALAHGAPFLIYQESDIIIRTLRDHLRSDTDSVIIDELEAFQNA
KEFVSFVLPHYLDRIKFFDVSEHSLFSHMGIETQVKSVFNREVSLRTGATIVFDPTEALT
SIDINSARATKGADIKETAYNTNLEAAKEIAIQLQLRDIGGLIVIDFIDMASEEHRVSIE
KAMEKAISLDRARIQIGTISQFGLLEMSRQRLMNSVTESVEKPCTICHGRGTTPTIPTLA
LTILRQLENSCNAAKQTARLTIQSSIEVITYILNEKRQEVIKLEDKHSIKITLLPNPYMQ
FPNFTINKQKWGKKSQHKSYQGISKPQHILVENGLANQAEIPAINVNRPNTRVPEKKIFL
FEKIKNTLFGKKKKQPNKRRTNPNNRNRNKNRK
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatattttaattaatgcaacccactccgaagaaataagagtaggtattataaaa
aacaaaaaattaactggccttaatatagaaactagccttaataagaaaacaaaaggcaat
atttaccgaggcaagatctctcgaatagaacaatcactagaagcagcatttgttgactac
ggcaaagaaaaacaaggatttttaccttttaaagaaattgccgaaactttatacaataac
actaaaactgaaggtgaaaaattaaccatttctgatgttttaaaagaaggacaaaaaatt
attgtccaaattgaaaaagaagaacgtggtaataaaggcgcggcacttagcacttatatc
aatcttgctggtgcttatatgattttaatgcctaacaatccgaaaagtcatggtatatca
aggcaaatagtctcctcagatcgacaatctttaaaagaaattattaacagaattattcta
cctaaacattcaggtttaatcattcgtactgccggctctggaaaaagctttgaagaattg
caatgggaagtagattatctcactgacttatggaaatcaatcaacacaatggctttagca
catggtgcacctttcttaatttatcaagaaagtgatatcattattcgtacattgcgggat
caccttcgctctgatactgatagtgttattattgatgaattggaagcttttcaaaatgct
aaagaatttgtcagctttgtattaccacactacttagatcgcatcaaattttttgatgtt
tcagaacactctttatttagccatatgggcattgaaacccaagttaaaagtgtatttaat
cgtgaagtatcgctacgaacaggagccactattgtttttgacccaactgaagcactcact
tcaattgacattaattctgctcgtgctactaagggtgctgacattaaagaaactgcctac
aatactaatcttgaagcagctaaagaaattgccatacaactgcaattgagagatattggt
ggattaattgtgattgattttatagacatggcttctgaagaacatagagtttcaatagaa
aaggccatggaaaaagcaataagtttagatcgagcacgtattcaaattggtacaatttct
caatttggcttacttgaaatgtcaagacaacgcttaatgaactcagtcactgaatcagtc
gaaaagccttgtactatttgtcatggtcgtggcactactccaactattccaactttagca
ttaactattttaagacaacttgaaaatagctgtaatgctgccaaacaaacagcacgttta
accattcaatcaagtatagaagtgattacttacattttgaatgaaaaacgccaagaggta
ataaaattagaagacaaacatagtattaaaattactttattacctaatccatatatgcaa
tttcctaatttcactattaataaacaaaaatggggtaaaaaatcacaacataaaagctac
caaggtatttcaaagccccaacatatattagttgagaatggtcttgcaaatcaagctgaa
attcccgccattaatgtcaatagacctaatacacgcgttcctgaaaagaaaattttcttg
tttgagaaaatcaaaaatactttatttggaaagaagaaaaaacaacctaataaacgtaga
acaaaccctaataatagaaaccgaaataaaaatagaaagtag
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