Candidatus Vesicomyidisocius calyptogenae: COSY_0440
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Entry
COSY_0440 CDS
T00530
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vok
Candidatus Vesicomyidisocius calyptogenae
Pathway
vok03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vok00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COSY_0440 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vok03021
]
COSY_0440 (rho)
03019 Messenger RNA biogenesis [BR:
vok03019
]
COSY_0440 (rho)
Transcription machinery [BR:
vok03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
COSY_0440 (rho)
Messenger RNA biogenesis [BR:
vok03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
COSY_0440 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA
AAA_25
AAA_22
S1CSD-TOTE-2
Mor
NACHT
Motif
Other DBs
NCBI-ProteinID:
BAF61559
UniProt:
A5CWY2
LinkDB
All DBs
Position
457248..458510
Genome browser
AA seq
420 aa
AA seq
DB search
MKLSELKKFSPEKLLELAQSLGAENISRAKKQTLIFIILKAKAANDEEVLGDGVLDVLQD
GYGFLRSSDDSYTSGADDIYISPNQIRRFNLSTGDLVAGKIRAPKKGEKYFALIKVSEVN
SEDPDNVRNRIPFASLTPIHPNERINLEVGNGGTEDITARVIDLVAPFGKGQRGLLVAPP
KAGKTMIMQNIATSISVNHPECELIVLLIDERPEEVTEMARTVRGEVIASTFDEPAKRHV
QVAEMVIQKTKRRSEQGKDVIILLDSITRLARAYNTIAPSSGKVLTGGVDANALQRPKRF
FGAARNIENGGSITIIATALIDTGSKMDEVIYQEFKGTGNMELHLEKRLSEKRIFPAINI
NASGTRREELITDEKELQKIWILRKILHPMDTVEAAEFLINRLKLTKTNDEFFALMSQKK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaaattatcagaactaaaaaaatttagcccagagaagttactagaactggcacaatct
ttaggtgcagaaaatatttctagagctaaaaaacaaaccttaatttttattattcttaaa
gccaaagcagctaatgatgaggaagttttaggtgatggtgttttggatgtgttgcaagat
ggttatggttttttaagatcaagtgatgattcttatacctcaggtgcagatgatatttat
atttcacctaatcaaattagacgttttaatttatcgactggtgatttggttgcggggaaa
attagagcacctaaaaaaggtgaaaagtattttgctttaattaaggtatcagaagtgaat
agtgaagatccagataatgttagaaataggattccatttgcctcactaacacctattcat
cctaatgaaaggattaatttagaagttggcaatggtggtaccgaggatattactgctaga
gtaattgatcttgttgcaccatttggaaaaggtcaaagaggtttattggttgcgccacct
aaggcaggtaaaactatgattatgcaaaatattgctacgtctatttcggttaaccatcca
gaatgtgaacttattgtgcttttaatcgatgagcgtcctgaagaggtgacagaaatggct
cgtactgttcgtggagaggtaattgcttcaacgtttgatgaaccagcaaaacgtcatgtc
caagttgctgaaatggttatccaaaaaacaaaacgacgttcagaacaaggcaaagatgtg
ataattttattagactcaattacacgtttggcacgtgcttataatacaattgctccttca
tcaggtaaagttctaacagggggggttgatgctaatgcgctacaacgtcctaagcgtttt
tttggagcggctagaaatattgaaaatggaggtagtattactattattgctactgcattg
attgacactggttcaaaaatggatgaagttatttatcaagaatttaaaggtactggtaat
atggagcttcatttagagaaacgcttaagtgagaaacgaattttcccagcaattaacatt
aatgcttctggtacacgtcgtgaagaattaattactgatgaaaaagaattacaaaaaata
tggattttgcgcaagattttgcatccaatggatactgttgaagcagctgaattcttaatt
aatcgtttaaagttgaccaaaactaatgacgaattttttgctttaatgtcgcaaaagaag
taa
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