Vogesella sp. LIG4: PSELUDRAFT_0753
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Entry
PSELUDRAFT_0753 CDS
T11840
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vol Vogesella sp. LIG4
Pathway
vol03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSELUDRAFT_0753
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vol03021
]
PSELUDRAFT_0753
03400 DNA repair and recombination proteins [BR:
vol03400
]
PSELUDRAFT_0753
Enzymes [BR:
vol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSELUDRAFT_0753
Transcription machinery [BR:
vol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSELUDRAFT_0753
DNA repair and recombination proteins [BR:
vol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSELUDRAFT_0753
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
SCK10309
LinkDB
All DBs
Position
I:complement(785022..789197)
Genome browser
AA seq
1391 aa
AA seq
DB search
MSYSFTEKKRIRKSFAKRNTVLDVPFLLATQIDSYTEFLQLGVPFDQRKDVGLQTAFKSI
FPIVSHNGFARLDFVHYILGEPPFDVQECQLRGITFAAPLRARIRLTILDKESSKPVVKE
VRENEVYMGEIPLMTSNGSFIINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDAKDQLFFRIDRRRKMPVSILLKALGYTNERILSEFYNTDTFYLSGDG
VFMKVVAERLKGEVAKADILDKDGKLIVAKDKRITAKHIRDIGAANLDRIEVPFDVLVGK
VLAKNVVAPETGEVIARANDEITDELLAKMDIQDVAEVEVLYTNDLDHGAYIAQTLRGDD
TADQLAARVAIYRMMRPGEPPTEDAVEQLFQRLFFNEDSYDLSRVGRMKFNTRTFQYKFD
DKSPDWFRSLIGEKFASRRDSIDGVLATEDIVSVIAILCELRNGRGEVDDIDHLGNRRVR
SVGELAENQFRAGLVRVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSSQLSQF
MDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINS
LAVFARTNEYGFLETPYRKVIDGKVTNEIEYLSAIEEGRYVIAQANAELDAEGTLIDELV
TCREKGETILATPDRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCLR
PEKSMVGTGIERAVAVDSGTTVIARRGGVVDYVDANRVVVRVNDEEAMAGEVGVDIYNFT
KFTRSNQNTNINQRPIVKVGDLIARGDVVADGASTDIGELALGQNMTIAFMPWNGYNFED
SILISEKVVADDRYTSIHIEELSVVARDTKLGPEEITRDIPNLSERMAGRLDDSGIVYIG
AEVNAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGMVGTVIDVQVF
TREGIERDKRAQSIIDAELKRYRLDLNDQLRIFDNDAFSRIERLIVGKPANGGPKRLAKG
TDINAEYLESLSSKHEWFDIRMADEDIAKQLELIKESLAQKREEFDLKFEDKKRKLTQGD
ELQAGVQKMVKVYIAVKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLNP
LGVPSRMNIGQILEVHLGWAAKGIGERIDRMLKQQQGVEELRSYLQSIYNETGKQEPIAE
MSEKEIMLLADNLRKGMTFATPVFDGAKETEIRQMLDLAYPDADPHTEQLEFNSSKTQMT
LFDGRSGEAFDRKVTVGVMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFG
EMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKIYENIVKGEHKIDAGMPESFNVLVKEIR
SLGLDIDLERY
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgagttattcgtttactgagaagaagcgtattcgtaaaagctttgcgaagcgtaacacc
gttctcgacgtcccattcctgctggcgacccagatcgattcgtacaccgagttcctccag
ctgggtgtgccgtttgatcagcgcaaggatgtaggcctgcagactgcattcaagtcgatc
ttcccgatcgtcagccacaacggctttgctcgtctggatttcgtgcattacatcctgggc
gaaccgccgttcgacgtgcaggagtgccagctgcgcggcatcacctttgctgccccgctg
cgtgcccgcatccgcctgaccatcctggacaaggaatcgtccaagccggtggtgaaggaa
gtgcgcgagaatgaagtctacatgggcgaaatcccgctgatgacctcgaacggttcgttc
atcatcaacggtaccgagcgtgttatcgtttcccagctgcaccgttccccgggcgtgttc
ttcgagcacgaccgcggcaagacgcactcttccggtaaactgctgttctccgctcgcgtg
attccttaccgcggctcctggctggacttcgagttcgatgccaaggatcagctgttcttc
cgtatcgaccgtcgtcgcaagatgccggtgtccatcctgctgaaggcgctgggctacacc
aacgaacgcatcctgtccgagttctacaacaccgataccttctacctctccggcgacggc
gtgttcatgaaggtggtggcagaacgcctgaagggcgaagtggccaaggccgacatcctg
gacaaggatggcaagctgatcgtggccaaggacaagcgcatcactgccaagcacatccgt
gatatcggtgcggccaaccttgaccgcatcgaagtaccgttcgacgtgctggtaggcaaa
gtgctggccaagaacgtggtggcgccggaaaccggcgaggtgattgctcgcgccaatgac
gagatcaccgatgagctgctggccaagatggacatccaggacgtggccgaagtcgaggtg
ctgtacaccaacgacctggaccacggtgcctacatcgcccagaccctgcgtggtgacgac
actgccgaccagctggccgcgcgcgtagccatctatcgcatgatgcgcccgggcgagccg
ccgaccgaagatgcagtggaacagctgttccagcgcctgttcttcaacgaggacagctac
gacctgtcccgtgttggccgcatgaagttcaacacccgtactttccagtacaagttcgat
gacaagtccccggactggttccgcagcctgatcggcgagaagttcgcctcccgccgcgac
tccatcgacggcgtactggctaccgaggacatcgtgtccgtgatcgccatcctgtgcgaa
ctgcgcaacggccgtggcgaagtggacgatatcgatcacctgggcaaccgtcgcgtgcgt
tccgtgggcgaactggccgagaaccagttccgcgccggtctggtgcgtgtcgagcgtgca
gtgaaggaacgcctgaaccaggccgaatccgaaaacctgatgccgcacgatctgatcaac
gccaagccggtatcggctgcgatcaaggaattcttcggttccagccagctgtcccagttc
atggaccagaccaacccgctgtccgaagtgacccacaagcgccgcgtatcggccctgggc
ccgggcggtctgacccgcgaacgagccggcttcgaggtacgtgacgtacacccgacccac
tatggccgcgtgtgcccgatcgaaaccccggaaggtccgaacatcggtctgatcaactcg
ctggcggtatttgcccgcaccaacgagtacggtttcctggaaaccccgtaccgcaaggtg
atcgacggcaaggtaaccaacgagatcgaatacctgtccgccatcgaagaaggtcgctac
gtgatcgcgcaggccaacgccgaactggatgccgaaggcaccctgatcgacgaactggtt
acctgccgtgaaaagggcgaaaccattctggctaccccggaccgcgtacagtacatggac
gtggctaccggccaggtagtatcggttgctgcctcgctgattccgttcctggaacacgat
gacgcgaaccgtgcactgatgggcgccaacatgcagcgtcaggccgtaccgtgcctgcgt
ccggaaaaatcgatggtaggtaccggcattgaacgtgccgtggccgtcgactccggtacc
accgtgatcgcccgtcgtggcggcgtggtggactacgtggatgcgaaccgcgtggtggta
cgcgtgaacgatgaagaagccatggccggcgaagtgggcgtggatatctacaacttcacc
aagttcacccgttccaaccagaacaccaacatcaaccagcgtccgatcgtgaaagtaggc
gacctgatcgcccgcggcgacgtggtggctgacggtgcttccaccgacatcggcgaactg
gcgctgggtcagaacatgaccatcgccttcatgccgtggaacggctacaacttcgaagac
tcgatcctgatctccgaaaaagtagtggccgacgaccgttacacctcgatccacatcgag
gaactgtcggtagtggcacgcgacaccaagctgggcccggaagaaatcacccgcgacatc
ccgaacctgtccgagcgcatggccggccgtctggatgattccggcatcgtctacatcggc
gcagaagtgaacgccggcgacgtgctggtgggcaaggtgactccgaaaggcgaaacccag
ctgactccggaagaaaaactgctgcgcgcgatcttcggcgagaaggcctccgatgtgaag
gacacctcgctgcgcgtaccgaccggcatggtcggcaccgtgatcgacgtacaggtgttc
acccgcgagggtatcgagcgcgacaagcgcgcccagtccatcatcgatgccgaactgaag
cgctaccgcctggacctgaacgaccagctgcgtattttcgacaacgacgccttcagccgt
atcgagcgtctgatcgtgggcaagccggccaacggcggtccgaagcgtctggcgaagggt
accgacatcaatgccgagtacctggaaagcctgtcgtccaagcatgagtggttcgacatc
cgcatggctgatgaagacatcgccaagcagctggaactgatcaaggaaagcctggcgcag
aagcgtgaagaattcgacctcaagttcgaagacaagaagcgcaagctgacccagggcgac
gagctgcaggccggtgtacagaagatggtgaaggtgtacatcgccgtgaaacgtcgcctg
caggctggtgacaagatggctggtcgccacggtaacaagggtgtggtttcccgcatcctg
ccggtggaagacatgccgtacatggcagacggccgtccggtggacatcgtgctgaacccg
ctgggcgtaccgtcgcgtatgaacatcggtcagattctggaagtacacctgggctgggct
gccaagggtatcggcgagcgcatcgaccgcatgctcaagcaacagcagggcgtggaagag
ctgcgcagctatctgcagagcatctacaacgaaaccggtaagcaagagccgatcgccgag
atgagcgagaaggaaatcatgctgctggcagacaacctgcgcaaaggcatgaccttcgct
accccggtattcgacggtgccaaggaaaccgagattcgccagatgctggacctggcctac
ccggatgccgacccgcataccgagcagctggaattcaacagcagcaagacccagatgacc
ctgttcgacggccgctccggcgaagccttcgaccgcaaggttaccgtgggtgtgatgcac
tacctgaagctgcatcacctggtagacgacaagatgcacgcccgttccaccggcccgtac
tcgctggttacccagcagccgctgggtggtaaggcgcagttcggtggtcagcgtttcggt
gagatggaagtgtgggcgctggaagcctacggcgccgcctacaccctgcaggaaatgctg
acggtgaagtcggacgatgtgaccggccgtaccaagatctacgaaaacatcgtcaagggc
gaacacaagatcgatgccggcatgccggaatccttcaacgtgctggtgaaggaaatccgc
tcgctgggtctggacatcgacctggaacgttattaa
DBGET
integrated database retrieval system
