Vogesella sp. LIG4: PSELUDRAFT_2339
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Entry
PSELUDRAFT_2339 CDS
T11840
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
vol Vogesella sp. LIG4
Pathway
vol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSELUDRAFT_2339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vol03400
]
PSELUDRAFT_2339
DNA repair and recombination proteins [BR:
vol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSELUDRAFT_2339
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSELUDRAFT_2339
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
UvrB
Helicase_C
UVR
ResIII
DEAD
Kinesin
AAA_30
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
SCK20930
LinkDB
All DBs
Position
I:2441717..2443732
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AA seq
671 aa
AA seq
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MVVTYPGSPFRLHQPFPPAGDQPTAIAGLVEGLSDGLSYQTLLGVTGSGKTYTMANVIAQ
TGRPAIIMAHNKTLAAQLYSEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSI
NEHIEQMRLSATKSILERPDCVIVATVSAIYGIGDPSEYHQMILHLKEGETTPQREIISR
LTAMQYDRNDMDFARGTFRVRGDVIDIFPAESNDTALRVSLFDDEVETLTLFDPLTGVTK
QRVGRFTVYPGSHYVTPRDTVLRACDKIKDELRERIEWYHKEGKLVEAQRIEQRTRFDLE
MLYEMGFCKGIENYSRHFSGRAPGEAPPTLIDYLPKNALMFIDESHVTVPQVGAMYKGDA
ARKQNLVDYGFRLPSAVDNRPLKFHEFERLMPQAVFVSATPSDYEHQHAGQVVEQVVRPT
GLVDPVIEIRPVSTQVDDLLSEIQLRIGQGERILVTTLTKRMAEQLADYYTEHGVKVRYL
HSDIDTVERVEIIRDLRLGMFDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLI
QTIGRAARNLNGKALLYADRVTNSMQRAIDETERRRAKQLAFNAEHGIVPQGVSKKIKDI
IDGVYHDKAQERQKLTETARVAMMDEKALAKEIKRLEKAMLEAARNLEFEQAAKLRDELK
VLKEQAWLSDL
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggtagtgacttatcccggcagcccgttccggctgcaccagccttttccgcccgccggc
gatcagcccaccgccatcgccggtctggtcgaaggcttgtccgatggactgagctaccag
accttgctgggcgttaccggttccggcaagacgtataccatggccaatgtcatcgcgcag
actggtcggccggccatcatcatggcgcacaacaaaacgttggccgcacagctgtacagc
gagatgcgcgagttctttcccgagaatgccgtcgagtatttcgtctcctactacgattat
taccagccggaagcctatgtgccgagccgggatcttttcatcgaaaaggattccagcatc
aacgagcacatcgagcagatgcggctgtcggccaccaagagcattctggagcggcccgac
tgcgtgatcgtggccaccgtgtccgccatctacggtatcggcgacccgtccgaataccat
cagatgatcctgcacctgaaggaaggcgagaccacgccgcagcgcgagatcatcagccgg
ctgacggcgatgcagtacgaccgcaacgacatggacttcgcccgcggcaccttccgcgtg
cgcggcgacgtgatcgacatcttcccggcggaaagcaacgacaccgcgctgcgcgtcagc
ctgttcgacgacgaggtggaaacgctcaccctgttcgacccgctcaccggcgtcaccaag
cagcgggtgggccgcttcaccgtgtacccgggcagccactacgtgacgccgcgcgacacc
gtgctgcgcgcctgcgacaagatcaaggacgagctgcgcgagcgcatcgagtggtaccac
aaggaaggcaagctggtggaggcgcagcgcattgaacagcgcacccgtttcgacctggaa
atgctgtacgagatgggcttctgcaagggcatcgagaactactcgcggcacttttccggc
cgcgcgccgggcgaggcgccgccgacgctgatcgactacctgcccaagaacgcgctgatg
ttcatcgacgagagccacgtcaccgtgccgcaggtgggcgccatgtacaagggcgacgcg
gcgcgcaagcagaacctggtggattacggcttccgcctgccgtcggcggtggacaaccgg
ccactgaaattccatgaattcgaaagactgatgccgcaggcggtgttcgtgtccgccacg
ccatccgactacgagcaccagcacgctggccaggtggtggagcaggtggtgcggccaacc
ggcctggtggacccggtgatcgagatccgcccggtatccacccaggtggacgacctgctg
tccgagatccagctgcgcatcggccagggcgagcggatattggtgaccacgctgaccaag
cgcatggcggagcagctggccgactactacaccgaacacggcgtgaaggtgcgctacctg
cactccgatatcgataccgtggagcgggtggaaatcatccgcgacctgcgcctgggcatg
ttcgacgtgctgatcggcatcaacctgttgcgcgagggcctggacattccggaggtgagc
ctggtggcgatcctggatgccgacaaggaaggcttcctgcgcagcgagcgcagcctgatc
cagaccataggccgcgcggcgcgcaacctcaatggcaaggcgctgctgtatgccgaccgg
gtgaccaactccatgcagcgcgccatcgacgaaaccgagcgccgtcgcgccaagcagctg
gcgttcaacgccgagcacggcatcgtgccgcagggcgtgagcaagaagatcaaggacatc
atcgacggcgtctaccacgacaaggcgcaggagcggcagaagctgaccgaaaccgcgcgc
gtggcgatgatggacgaaaaggcgctggccaaggaaatcaagcggctggaaaaagccatg
ctggaagcagcgcgcaacctggagttcgagcaggccgccaaactgcgcgacgagctgaag
gtactcaaggaacaagcctggctgagcgacctgtaa
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