Vogesella sp. LIG4: PSELUDRAFT_3808
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Entry
PSELUDRAFT_3808 CDS
T11840
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vol Vogesella sp. LIG4
Pathway
vol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSELUDRAFT_3808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vol03021
]
PSELUDRAFT_3808
03019 Messenger RNA biogenesis [BR:
vol03019
]
PSELUDRAFT_3808
Transcription machinery [BR:
vol03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PSELUDRAFT_3808
Messenger RNA biogenesis [BR:
vol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PSELUDRAFT_3808
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
S1CSD-TOTE-2
ATPase_2
NACHT
AAA
AAA_22
Fungal_virus_P2_C
AAA_19
ResIII
Motif
Other DBs
NCBI-ProteinID:
SCK30610
LinkDB
All DBs
Position
I:complement(4070568..4071824)
Genome browser
AA seq
418 aa
AA seq
DB search
MHLTDLKRTHVSELVEMAIANEIDGASRLRKQDLLFALLKNQAKKGESIFGEGTLEVLPD
GFGFLRSPDSSYLAGPDDIYVSPSQIRRFNLHTGDTIEGEIRTPKEGERYFALVKVDKVN
GGPPEQAKNKILFENLTPLFPTERLNLERDIRGEENITSRLIDLISPIGKGQRGLLVAPP
KSGKTVMLKHIAHAITSNHPEVEMIVLLIDERPEEVTEMQRSVKGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPASGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNMEIHLDRRMAEKRIFPAINI
NRSGTRREELLIPQEQLQRIWVLRKLLYPMDDLEAMEFMLDKLRATKSNLAFFDSMRR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcactgatctcaagcgtacgcatgtgagcgaactcgtcgaaatggccattgcc
aatgaaatcgacggtgccagccgcctgcgcaagcaggatttgctctttgcccttttgaaa
aaccaggccaaaaaaggcgaaagcatctttggcgaaggtacgctggaagtgctgccggac
ggcttcggtttcctgcgcagcccggattcctcctacctggccggcccggatgacatctat
gtcagcccgtcgcagatccgccgcttcaacctgcacaccggcgataccatcgagggcgag
atccgcaccccgaaggaaggcgaacgctacttcgcgctggtgaaggtggacaaggtgaac
ggcggcccgccggagcaggccaagaacaagatcctgttcgagaaccttaccccgctgttc
ccgaccgagcgcctgaacctggagcgcgacatccgcggcgaggaaaacatcaccagccgc
ctgatcgacctgatctcgccgatcggcaagggccagcgcggcctgctggtggcaccgccg
aagtccggcaagaccgtgatgctcaagcacatcgctcacgccatcaccagcaatcatccg
gaagtggagatgatcgtgctgctgatcgacgaacgcccggaagaagtgaccgagatgcag
cgttcggtgaagggcgaagtggtgtcctccaccttcgacgaaccggccacccgccacgtg
caggttgccgaaatggtgatcgagaaggccaagcgcctggtggagcacaagaaggacgtg
gtgatcctgctggattccataacccgtctggcgcgcgcctacaacaccgtgattccggct
tccggcaaggtgctgaccggtggtgtggacgccaacgcgctgcagcgcccgaagcgcttc
ttcggtgccgcccgtaatatcgaggaaggcggctcgctcaccatcatcgccaccgcactg
gtagataccggctcgcgcatggatgacgtgatctacgaagaattcaagggtaccggcaac
atggaaatccaccttgaccgtcgcatggcggaaaagcggattttcccggccatcaacatc
aaccgctccggcacccgccgcgaagagctgctgattccgcaggaacagctgcagcgcatc
tgggtgctgcgcaagctgctgtacccgatggatgacctggaagcgatggagttcatgctc
gacaagctgcgggcaaccaagtccaacctggcgttcttcgattcgatgcgccgctag
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