Veillonella orientalis: VEIS_07560
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Entry
VEIS_07560 CDS
T10808
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vor Veillonella orientalis
Pathway
vor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VEIS_07560 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vor03019
]
VEIS_07560 (rnr)
03016 Transfer RNA biogenesis [BR:
vor03016
]
VEIS_07560 (rnr)
Enzymes [BR:
vor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VEIS_07560 (rnr)
Messenger RNA biogenesis [BR:
vor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VEIS_07560 (rnr)
Transfer RNA biogenesis [BR:
vor03016
]
Prokaryotic type
tRNA degradation factors
VEIS_07560 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
RNase_II_C_S1
S1_RRP5
OB_HELZ2
OB_PDCD11
Ntox5
CSD
Motif
Other DBs
NCBI-ProteinID:
BBU36235
UniProt:
A0ABN5XV20
LinkDB
All DBs
Position
complement(850686..853070)
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AA seq
794 aa
AA seq
DB search
MKKKVLDFYKSIQPHAYHIEDAAMDNHIRGGKDLEMFIRSAKMLAREGVLISSRPDVYQY
AEQQHEEYEGIYKGYRKSFGFVIMPEDEDIYVAEQNKGTAMHNDKVRVRVIPSNYTKHKR
EGIIVDVIERANETVVGTYDRQQHFGFVIPDDERIGTDIFVDLKNTLDARSGAKVLVKII
KWPEGEKKPEGIITEILGYKGDVGLDINCIMANHKIPFSFPDDVIKASKKFDTVIHDDPA
RWDLRDIQMVTIDGEDAKDLDDAVSGRKLPNGNYELGVHIADVSHYVTSGQPIDNEAYKR
GTSVYLVDRVVPMLPEVLSNGICSLNAHEDRYAMTCMMEIDHTGKVVNYRIRPSIIHVGR
RCSYKEIYKALEENIIPHDLHDFMPMLRELAEISKILNTMRRRRGALDFDFPEYKVLLDH
DGTPLRIVKRDRTMAERLIEECMLIANETVATHLEHTHRTSVYRIHENPSEEKLDLFQKV
LNYLGQNLVLSTDGVTPRDFQKILDVVKGQDIEQVAQIMTLRSMQQAKYSINNVGHFGLA
STCYTHFTSPIRRYPDLMVHRLLKADMHWKNGYSKRDVDESFLAGAVEHSSMQEQVATEA
ERDTVDLKKTQYMVPFVGEVFEGTISSITSFGMFVELENGIDGLVHMSMMNDDYYFFDEE
HFVLVGKRTGKTYHLGEKVTVTLAKADVEKKQIDFVLGEVNNLMAIQEQLRSGSDYASSR
DGFDGGKGRKSSGKGRKSSGKSSKKSSRRDSSKSGHSRYDTFSKKSNKGKSSRKKSNKTT
KRNQSKKSKSKRKR
NT seq
2385 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaagaaagtattagacttttataaatctatacaaccacatgcatatcatattgaa
gatgcggccatggataaccacatccgtggtggtaaagatcttgagatgtttattcgttct
gcaaaaatgcttgctcgagaaggggtattaatatcttcacgacctgatgtatatcaatat
gcagagcaacaacatgaagaatatgaaggtatttataagggctatcgtaagtcttttggc
tttgtcattatgcctgaagatgaagatatatatgtagcagaacaaaataaaggtactgcc
atgcataatgacaaggttcgcgttcgcgtcataccttctaattatacaaagcataaacga
gaaggcattatcgttgatgttattgaacgagctaatgaaactgtagtgggtacttatgac
cgacaacaacactttggctttgttatccctgatgatgaacggatagggactgatatcttc
gtagatttaaaaaatacattagatgctcgtagtggtgcaaaggtactagtcaaaattata
aaatggccggaaggcgagaagaagccagaaggtattattacggaaattcttggctataaa
ggcgatgtaggcctcgatattaattgcatcatggcgaatcataagattccatttagtttt
ccagacgatgtcattaaagctagcaaaaaatttgataccgtcattcatgacgatcctgct
cgttgggatcttcgtgatatacaaatggttaccattgatggggaagatgcaaaggattta
gacgatgctgtgagtggtcgtaaattgccaaatggtaattatgaattaggtgtacatatt
gcagatgttagtcattatgtaacatctgggcagcctattgataatgaggcttataaacgg
ggaacatctgtatatttagttgacagagtagtaccgatgctacctgaggttttgtctaat
ggcatttgtagtttaaatgctcatgaagatcgttacgctatgacgtgtatgatggaaatt
gatcatactggtaaggttgtaaattatcgtatacgaccttctattattcacgtaggtcgt
cgttgcagctataaagagatctataaggccttagaggaaaatattattcctcatgactta
catgactttatgccgatgcttcgtgagttagctgaaatctctaaaattcttaatacaatg
cgtcgccgtagaggtgctttagactttgatttccctgagtataaggtattacttgatcat
gatggtacaccgttgcgcatcgtaaaacgagatcgtaccatggcggaacgacttattgaa
gaatgtatgctcattgccaatgaaacagtggctacacatttggagcatacacaccgtaca
tcggtatatcgtatacatgagaatcctagtgaggaaaaactagatttattccaaaaagtt
cttaattatttaggtcaaaacctagttctcagtactgatggtgtaacaccacgagatttc
caaaaaatcttagatgtagtaaagggtcaagatattgagcaagtggctcaaattatgacc
ttgcgttctatgcaacaggcgaaatatagcatcaacaatgtagggcattttggcttggca
tctacatgctatacgcattttacatctccaattagacgatatccagacttaatggttcat
cgccttttaaaagctgatatgcattggaaaaatggctattctaaacgcgatgtggacgaa
tcattcttagcgggagctgttgaacattcttctatgcaagaacaagttgctacagaggct
gaacgagatacagtagatcttaaaaagacacaatatatggttccatttgtaggggaagtc
tttgaaggaactatttctagcattacatcctttgggatgtttgtagaattagaaaatggt
atcgatggtctcgttcatatgagcatgatgaatgatgattactatttctttgatgaagaa
cattttgtgcttgtaggtaagagaacaggtaaaacctatcacttaggtgaaaaggtaact
gttacattagcaaaagccgatgtagaaaagaaacagatcgactttgtactaggtgaagtt
aataatctaatggctatacaagaacaattgcgaagtggttctgactatgcaagtagtcgc
gatggttttgatggtggcaaaggtcgtaaatcttcgggcaaaggtcgtaaatcttcgggc
aaatctagtaaaaaatcttcccgacgtgatagcagtaaatctggccattctagatatgat
actttcagtaaaaaatctaacaaaggtaaatcaagtcgtaagaagtctaataaaacgact
aagcgcaatcaatctaagaaatctaaaagtaaacgtaaacgatag
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