Veillonella orientalis: VEIS_11930
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Entry
VEIS_11930 CDS
T10808
Symbol
deaD
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vor Veillonella orientalis
Pathway
vor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VEIS_11930 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vor03019
]
VEIS_11930 (deaD)
03009 Ribosome biogenesis [BR:
vor03009
]
VEIS_11930 (deaD)
Enzymes [BR:
vor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VEIS_11930 (deaD)
Messenger RNA biogenesis [BR:
vor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VEIS_11930 (deaD)
Ribosome biogenesis [BR:
vor03009
]
Prokaryotic type
rRNA helicases
VEIS_11930 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_22
UvrD-helicase
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BBU36672
UniProt:
A0ABM7HHU2
LinkDB
All DBs
Position
1328872..1330170
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AA seq
432 aa
AA seq
DB search
MKSFKSLGVCDELIQALQKQGIKEPTPIQEQAIPVVFKGNDVIAKAQTGTGKTLAFLLPI
LQRVHTDVHQEQVLIIAPTRELVKQISDEAKEIGSILNVDILPLIGGKTIEAQLQQLGRR
PQVILGTPGRLLDHAKRGSLHLDCIRRVVLDEADQMLHMGFLPDIENLISQTDANRQLLL
FSATIPDKIRNLAKAYMSKPASVTAEGKHVTLESIDQRVYMMNPEEKTQRLIKMIEEDNP
FLAIVFCNKREGAVRLSYELTAAGLNIAEIHGDLTQGRRTQILRDFAKAKTQILVATDIA
ARGIDIEGITHVYNYDVPRDVDYYIHRIGRTGRAGNSGVAVTFATPQDESWLRRIERAIQ
ATLTKYTKDGQIKTKGNASAAPKRAKSSGKPKITSSYQSTKAKAHKARGHKGANTRQRRT
STSQTGRRGKRR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcttttaaatctctaggcgtttgtgatgaactcatccaagcccttcaaaaacaa
ggtatcaaggagccaactccaattcaagaacaagccattcctgtcgtatttaaagggaat
gatgttatagcaaaagctcaaacaggcacaggcaaaacattagccttcttactgccgatt
ctgcaacgtgttcacaccgatgtgcatcaagaacaagtgctcattattgcacctacccgt
gagcttgtaaaacaaatctccgatgaagcaaaagaaataggttctattttaaatgtagac
attcttcctcttatcggcggtaaaacgattgaagcccagttacaacaattaggacgccgt
ccgcaagttatcttaggtacgcctggtcgcctattagaccatgctaaacggggttcactc
cacttagattgtatccgtcgtgtcgtactcgatgaagctgaccaaatgcttcatatgggt
ttcttaccagacattgaaaacctcattagccaaacagatgcaaacagacaacttctatta
ttctctgcaacgattcctgataagattagaaatcttgcaaaagcgtatatgtccaaacca
gcttctgtaacagctgagggtaaacatgttacacttgaatcaatcgatcaacgcgtatac
atgatgaacccagaagaaaaaacgcaacgtctcatcaaaatgatcgaagaagacaaccca
ttcttagcaattgtgttctgtaataagcgtgaaggtgctgttcgcttatcctatgagtta
actgcagcaggcctaaatattgctgaaatacatggcgatttgacacaaggtcgacgcact
caaatattacgtgatttcgcaaaggctaaaacacaaatcttagtagcaacagatattgca
gctcgcggtattgacattgaaggcattacacatgtttataactacgacgtaccacgtgac
gtagattactatatccaccgtattggccgtactggtcgtgcaggcaactctggtgtggcc
gttacatttgctacgccgcaagatgaatcttggttacgtcgcattgagcgcgccatccaa
gcaacgcttactaaatacactaaagatggacaaattaagactaaaggtaatgcaagtgcg
gcacctaaacgtgcaaagtcatctggcaaacctaagattacaagttcctatcaatctaca
aaggctaaagctcataaagctcgtggccacaaaggcgctaatacacgccaacgccgtaca
tccacatcccaaacaggacgtcgtggcaaacgtagataa
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