Veillonella orientalis: VEIS_13540
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Entry
VEIS_13540 CDS
T10808
Symbol
sbcC
Name
(GenBank) nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vor Veillonella orientalis
Brite
KEGG Orthology (KO) [BR:
vor00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vor03400
]
VEIS_13540 (sbcC)
DNA repair and recombination proteins [BR:
vor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VEIS_13540 (sbcC)
Archaeal homologous recombinant proteins
VEIS_13540 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_27
AAA_29
AAA_15
GTP_EFTU
nSTAND3
DUF4349
AAA_21
NPV_P10
PAS_12
DUF1244
AAA_16
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
BBU36833
LinkDB
All DBs
Position
complement(1517802..1520885)
Genome browser
AA seq
1027 aa
AA seq
DB search
MKPISLTIEAFGPYRDSVTLDFNELQNHSMFLISGPTGAGKTSILDAMVYALYGEPSGEV
RKTDAIRSDFAEPERMTRVDFSFAIGEAQYRVERLPKQLVAKKRGTGMREQNASATVYEM
KDGEWKVIATSAAAIRDTIQQIIGFRKDQFLQVVLLPQGEFRKLLVASTSEREELLHTLF
RTELYRRLQDALKSAYDEAKSGIEENITKQSALLQSIPHDEEISVLTIEHVRELLKDREP
HRDTLVVERDKAVDVVNQFNTLRNEWALYNQVQQSLIEATNKLDLVKEREKERSSLNEKV
QFLTGLTPSYELYKQLGDKQAVLKTLKTALSDAKKSVEAATQHESKCTEVYETLESQGET
MQAKRTTLAQLQQQAEQFNELVVLHKELSTLNSQLETQDREKSEAKLQVQHKLVADLEAA
LVEARKQFQANSKALESISHIQEQLGYLQRYSELLVEKDKVQNDIDAKERSLATLDKTVN
NSKIQLERLEHLMAEGRAFELVHLVVDNKPCPVCGSTEHPQLASKPELYPTKEEIEAARA
VRDGVLQKQASEIGQKETLSVRLHELDEQVKDQVSKLKSSIDNFTEDAFDSIQQGLASQM
EQLTALRRDTEQLTKIITKNEHDLVEAKGILSKLEIGHNELLNNLHDVAVQISSVQAKID
GLSKILPTTDLDAWHKQIESLETEIKEYDEQVKVCKSNLDAAKEQLNAKRGRLEILFAQV
QEETKNLDGLYQEYVKSLQSISVSEDDFIDALSDYKALDTFRTELHALDEDFSTAQAVYD
AALKQAQSVIEPSDTVSDEVYDTAVEKRDNLVGSLAAWDKETKHIETTLASLEELEKAMG
EARNEVEFLSRLNDLANGGEQGFKNVTFERYVLGAILDEVVYAANLRLQKMSRSRYSLER
SDYTGGGRGKQGLDLAVMDAFTGQSRPANTLSGGETFLASMALALGLADVIQSYAGGIHM
DTMFIDEGFGTLDPDTLELAMETLVQLQSSGRLIGMISHVPELKTRIPAHLEVTRGDDGS
TAKFVIN
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgaagcctatatctttaactatagaagcctttggtccgtaccgcgattcggttaccttg
gactttaatgagctccaaaaccattccatgttcctcatctctggtcctacaggagcgggg
aaaacatccatactagatgcgatggtgtatgccttatatggcgaacctagtggagaagtg
cgaaaaacagatgctatccgcagtgattttgcagagcctgaacgtatgacccgtgttgac
ttttcctttgctatcggtgaggctcagtatcgtgttgaaagattgccaaaacaattggta
gctaaaaaacgtggtacaggtatgcgtgagcagaatgctagtgccactgtatacgaaatg
aaagatggcgagtggaaagttatcgctacctctgccgctgctattcgggatacgattcaa
caaatcataggttttcgtaaagatcaattcttacaagtagtacttttgccgcaaggggag
tttagaaaattattagtagcctctactagtgaacgggaggagttattacatacactcttt
agaactgagttatatcgaagattacaggatgccctaaaatctgcttatgatgaggcaaaa
tccggtattgaagaaaatataacaaaacaatctgcattactgcaatccattccgcatgat
gaagaaatctctgtactaactattgagcatgtacgggaacttttgaaagatagagaacct
catcgtgatacgcttgttgttgaacgtgataaagctgtagatgtagtgaaccagttcaat
acattgcgcaatgagtgggccttatataatcaggtacaacaatctcttattgaggctacg
aataaattagacttggtaaaagaaagagaaaaggaacggtctagtttaaatgaaaaggtt
cagttcctcaccgggttaacaccaagctatgaattgtataaacaacttggtgataaacag
gctgtattaaaaaccttgaaaacggcactttcagatgcaaaaaaaagtgtagaggccgca
actcaacatgagtctaaatgtacagaggtttatgaaacgttagaatctcaaggtgaaact
atgcaagctaagcggactacgttggctcaattacaacagcaggccgaacagtttaatgag
ttagtagtgctacataaggaattgagcacattaaatagccagttagaaacacaagaccgc
gagaaaagtgaagctaagttgcaggtacagcacaagctagttgctgatttagaagctgcg
ttagttgaagcgagaaaacagtttcaagctaatagtaaagcgttagaatctatttctcat
atccaagaacagttggggtatttgcaacgatattctgaattgttagtagagaaagataag
gttcaaaacgatatcgatgctaaagagaggtcgttagcaactctagataaaacagtaaat
aactcaaagatacagcttgaacggttagaacatttaatggcagagggacgagcttttgaa
ctcgtccatttagtagtagataataagccatgtcctgtatgtggctctacagagcatcca
cagttagcatctaagcctgagttatatcctacaaaagaggaaatagaagcggctcgtgca
gtgcgtgatggggtgttgcaaaagcaggctagcgaaattggtcagaaagaaacgttatct
gttcgtttacatgagttagatgagcaagttaaagaccaagtttctaaactcaaatcatcc
attgataattttacagaagatgcatttgattcaattcaacaaggcttggcgtctcaaatg
gagcagcttacagctttacgtagagatactgaacagttgaccaaaattataactaaaaat
gagcatgacttggttgaggctaaaggtatattatcaaagttggaaatcggtcataatgaa
ttgcttaataatttgcatgatgtagcggttcagattagctctgtacaggctaagatagat
gggttatctaagatattgccaactacagatctcgatgcatggcataaacagatagaatca
ttagagactgaaattaaagaatacgatgagcaggtgaaggtttgtaaatcaaatctagat
gcggctaaagaacagctcaatgctaaacgggggcgtctagaaatcttatttgcacaagtg
caggaagaaacaaaaaatcttgatggactttatcaagaatatgtaaagtcattacaatca
atttctgtatctgaagatgactttatagatgcgttaagcgattataaggccttagatacg
tttagaactgagctacatgcattggatgaggattttagtacagctcaagctgtatatgat
gcggctttgaaacaagcccagtctgtaatagaaccaagtgatacggtttctgacgaagta
tatgatacggccgtagagaaacgtgataatttggtaggttctcttgcggcttgggataaa
gaaacaaaacatattgaaaccacattagcatcattagaagaactcgaaaaggctatgggt
gaagctcgtaatgaagtagagtttttgagccgattaaatgatctcgctaatggtggagaa
caagggtttaaaaatgtaacctttgaacgatatgtgctaggtgctattttagatgaagtt
gtgtatgccgccaatttacgtcttcaaaagatgagtcgtagtcggtattccttggaaagg
tctgactataccggtggtggtcgaggcaaacaaggccttgatttggccgttatggatgct
ttcacaggtcaatcaagaccagcgaacacattgtccggaggggaaaccttcttggcctct
atggcccttgccttgggcctagctgatgtcattcaaagttatgcaggtggtattcatatg
gatacgatgttcatcgacgaaggctttggtactcttgacccagatacattagaacttgcc
atggaaacattggtacaattacaatcttctggacgcctcatcggtatgatttctcatgta
cctgaattaaagacccgtatacctgcccacttagaggtcacacgtggtgatgatggtagt
acagcaaaatttgtgattaactag
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