Vibrio ostreae: KNV97_01025
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Entry
KNV97_01025 CDS
T08661
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vos
Vibrio ostreae
Pathway
vos03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vos00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KNV97_01025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vos03019
]
KNV97_01025
03009 Ribosome biogenesis [BR:
vos03009
]
KNV97_01025
Enzymes [BR:
vos01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KNV97_01025
Messenger RNA biogenesis [BR:
vos03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KNV97_01025
Ribosome biogenesis [BR:
vos03009
]
Prokaryotic type
rRNA helicases
KNV97_01025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
PTP-NADK
DUF2390
Motif
Other DBs
NCBI-ProteinID:
QXO16140
UniProt:
A0A975YM76
LinkDB
All DBs
Position
2:230588..232486
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AA seq
632 aa
AA seq
DB search
MQENVIQFSDLALNSAILSALNEMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAF
SLPLLNKLDLSQHKPQAIVMAPTRELAIQVAAEVKNLGQNIKGLKVLEIYGGASIVDQMR
ALKSGAHIVVGTPGRVKDLITRERLHLDECHTFVLDEADEMLKMGFVDDVTWIMEQAPAT
AQRVLFSATMPPMVKDIVDRFLREPARVDVAGSNQTVAKVEQQFWVVKGVEKDEAMARLL
ETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTRSSMEEIQLPHRDKVAEARLSMLAVELEAEKAHSSLEKFAELVEKLQASLEIDATT
LAAILLKRQQGKRPLFYVGEDPMLEALERDKLRRRERRENGDRGDRGERGGRREFANTEW
DTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKSMTSEVSSKLR
KLRIRQKEVGAVVCDFDDFRESRGRREGGNGGGRRDGGYRGNREGGNGARREGGGYRGNR
EGGERRFDRNRGGDDRGNYRGERGHSRRRNDA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaaacgtcattcaatttagtgacttagcacttaacagtgccatcctttccgcc
ctgaacgaaatgggcttcgtttctccgactccaattcaggctgctgcaattcctttgctt
ctggaaggccgtgatgctctgggtaaagcgcaaaccggtactggtaaaacagcggcattc
tctctgcctctgctgaacaaactggatctgtcacaacataagccacaggctattgtgatg
gcaccaactcgtgaactggctatccaggttgcagcagaagtgaaaaaccttggccaaaac
atcaaaggcctgaaagttcttgagatctacggtggcgcctctatcgttgatcaaatgcgc
gctcttaaatcaggcgctcacattgttgtgggtactcctggccgcgttaaagacctgatt
actcgtgaacgcctgcacctggacgaatgtcatactttcgttctggatgaagcggacgaa
atgctgaaaatgggcttcgttgacgatgtaacctggatcatggaacaagctcctgcgaca
gcacaacgcgttctgttctctgccactatgcctccaatggttaaagacatcgttgatcgc
ttcctgcgtgaaccagcgcgtgttgacgttgccggttctaaccagactgttgctaaagta
gagcagcaattctgggtagtgaagggcgtagagaaagacgaagcgatggctcgtctgctt
gaaaccgaagaaactgacgcatctatcgtattcgtgcgtactcgtcaggataccgaacgt
ctggctgattggctgtgtgcacgtggctttaaagcggcggcactgcacggcgatatccct
cagtcactgcgtgagcgtacggttgaccatatcaaacaaggtgtgattgatattctggtt
gccactgacgttgttgctcgtggtctggacgtgccgcgtatcacgcacgtatttaattac
gacatcccgttcgatgtagaatcttacattcaccgtatcggtcgtactggccgtgctggt
cgtaaaggtaaagcgatcctactggttcgtaccaaccagatccgtatgctgcgtactatc
gagcgcgtgactcgttcttcaatggaagaaatccagctgccacaccgtgacaaggttgct
gaagcacgcctgagcatgctggcagtcgaactggaagcagagaaagcacactcttctctg
gagaaattcgctgagctggttgaaaaactgcaagcttctctggaaattgatgcaacgact
ctggcggctatcctgctgaaacgtcagcaaggtaagcgtccgctgttctacgttggtgaa
gacccaatgctggaagcgcttgagcgtgacaagctgcgtcgtcgtgagcgtcgtgagaat
ggcgatcgtggtgaccgcggtgagcgtggtggccgtcgtgaattcgctaacactgaatgg
gatacttaccagctgcaagtgggccgtgaccaaggcgttcaggttaaagatatcgttggc
gcacttgcaaatgaactgggtctgaccaaaggttctatcggtgcgatcaaactggctcag
ggccacacattcgttcagctgcctaagagcatgaccagcgaagtgagttcaaaactgcgt
aaactgcgtatccgtcagaaagaagtgggtgcggtagtttgtgattttgatgacttccgt
gagtctcgtggccgtcgtgaaggcggtaacggtggtggtcgtcgtgacggtggttaccgt
ggtaaccgtgaaggcggtaacggtgctcgtcgtgaaggtggtggttatcgtggtaaccgt
gaaggtggcgagcgtcgctttgatcgcaaccgtggtggcgatgaccgtggtaactaccgt
ggtgaacgtggtcacagccgtcgtcgtaacgacgcataa
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