Vibrio ostreae: KNV97_21025
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Entry
KNV97_21025 CDS
T08661
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
vos
Vibrio ostreae
Brite
KEGG Orthology (KO) [BR:
vos00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vos03009
]
KNV97_21025 (rlmD)
Enzymes [BR:
vos01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KNV97_21025 (rlmD)
Ribosome biogenesis [BR:
vos03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KNV97_21025 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
RrnaAD
Methyltransf_25
TRM5-TYW2_MTfase
Methyltransf_11
MTS
PCMT
PrmA
Cons_hypoth95
Methyltr_RsmB-F
Methyltransf_23
Ubie_methyltran
FtsJ
Methyltransf_15
DREV
CMAS
DOT1
Motif
Other DBs
NCBI-ProteinID:
QXO17786
UniProt:
A0A975UBK9
LinkDB
All DBs
Position
1:3213650..3214972
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AA seq
440 aa
AA seq
DB search
MARFFQPKKKTTLNQKHQAVSVTKLDHQGAGIAFQDNKPVFIDGALPGEEVLMQLTESKS
KFARAKLIKVLKPSGERVEPFCPHYGECGGCDLQHLAHSAQIEHKQQALSQLMAKFAGQT
LALSAPVCCDDQGYRRRARLSLLWDKKSSQLQFGFRRKQSKNIVTVTDCAVLEPSLNALL
PELKTLLSDFARPDQLGHVELVKGDNTRVLVLRHLAPLAKADMAALSGFAEQHALTLYLM
PASDELKLICGPEAEYLEAGVTIPFLPSHFIQVNQQVNQAMVKQALSWLDVQPQDRVLDL
FCGLGNFSLPLAKLAKEVVGVEGVDDMVRHAQSNAARNQISNTDFYQANLEQDMTNEAWA
GEKFAKVLLDPARAGAAGIVEQLARLGAQRVVYVSCNPATLARDSQSLLSQGYQLVKLGM
LDMFPHTSHLESMALFVKNR
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atggcacgttttttccaaccgaagaaaaagaccacacttaatcagaaacatcaggcggtc
agtgtgactaagctggatcaccagggcgcagggatcgcttttcaggataacaagccggtg
tttatcgacggggctttgccgggggaagaggtgctgatgcagctcacggagagcaaaagt
aaatttgcccgggccaagctgattaaagtgcttaaaccgagtggtgagcgggtggagcct
ttctgcccgcactatggcgaatgcggcggctgcgatttgcagcatctggcgcacagcgcg
caaattgaacataaacagcaagcgctgagtcaactgatggcaaagtttgccggtcagacc
cttgcactctccgcgccggtttgttgtgatgatcagggctaccgccgccgtgcgcgcctc
agcctgctgtgggataaaaagtcctcccagctgcagtttggtttccgccgcaaacagagc
aaaaatattgtcactgtcactgactgtgcagtgcttgagccgagcctgaatgctctgctg
cctgaactgaaaaccctgttgagtgattttgcccgcccggatcagctcggtcacgttgaa
ctggtgaaaggtgacaacacccgcgtgctggtgctgcgtcatcttgcgccactggcgaag
gccgatatggctgcgttgagcggctttgccgagcagcacgctctgaccctgtatctgatg
ccggccagtgatgagctgaaattgatctgcggccctgaggctgaatatctcgaagccggg
gtgacgattccgttcttaccgagtcattttattcaggtcaaccagcaggttaaccaggcg
atggtcaagcaggcgctgagctggctggatgtgcagccgcaagaccgggtgctggatctg
ttctgtggtctgggcaacttcagcctgccgctggccaagcttgccaaagaagtggtcggg
gttgaaggtgtggatgatatggtgcgtcatgcgcagagtaatgccgcacgcaaccagatt
agtaatactgacttttatcaggctaatttggaacaagatatgacgaatgaggcgtgggca
ggggaaaaatttgctaaagtactgctcgacccggcacgagcgggggctgccggcattgtc
gaacagttggcccgacttggcgcccagcgtgtggtttacgtctcgtgtaatcctgctacg
cttgctcgtgacagtcaaagcttgctgagtcagggataccagttggttaaactgggcatg
ctggatatgtttccgcataccagtcacctcgaatccatggctttgtttgtaaaaaatcgg
taa
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