Vibrio owensii: A9237_06375
Help
Entry
A9237_06375 CDS
T04844
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vow
Vibrio owensii
Pathway
vow02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vow00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A9237_06375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vow03021
]
A9237_06375
Transcription machinery [BR:
vow03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A9237_06375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
AQW57758
LinkDB
All DBs
Position
1:1437931..1439793
Genome browser
AA seq
620 aa
AA seq
DB search
MDQNPQSQLKLLVIKGKEQGYLTYAEVNDHLPAEIVDSEQVEDIIQMINDMGIKVVETAP
DADDLALNDDTNITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEEGINQVQSSVAEYPGTIPYILEQFDKVQAEELRLTDLISGFVDPDADDTAAPTA
THIGSELTESQLEEEDEEDVDEDEESDDDSDDAEEDVGIDPELALEKFNQLRSTYQNLQL
AINEHGYESPKATVANELMLDVFKEFRLTPKQFDHLVNELRTAMDRVRTQERLIMKAAVE
YGKMPKKSFIALFTGNESSEAWLDEILSSDKPYAEKIKRSEEEIRRSITKLKMIEEETSL
NVQNIKDISRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE
MGREPLPEELAERMQMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLD
SATATSLKMATKDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK
ALRKLRHPSRSETLRSFLDE
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccgcagtcacagctaaagttacttgttatcaaaggcaaggaacaaggc
tatctgacctacgccgaagtaaatgaccacctgcctgctgaaatcgtagattcagaacag
gtagaagacatcattcagatgatcaacgatatgggtatcaaggtagtagaaactgcccct
gatgccgatgatctagcactgaacgatgacacaaacattaccgatgaagatgcagcagaa
gctgcagcagcagcactttctagcgtagaaagtgaaattggtcgtacaacagacccagta
cgtatgtacatgcgtgaaatgggtactgtagagctgctgactcgcgaaggcgaaatcgac
atcgcaaaacgtattgaagaaggtattaaccaagttcaatcgtctgttgctgaataccct
ggcactatcccatacattcttgagcaatttgacaaagttcaagcagaagaacttcgtcta
acagacctaatctctggatttgttgaccctgatgcagacgacacagctgcaccaacagca
acgcacatcggttctgaactgactgaatctcagctagaagaagaagacgaagaagacgtt
gatgaagacgaagaaagcgatgacgattcagatgatgctgaagaagatgttggtatcgac
ccagagctagcgcttgagaaattcaaccagctacgcagcacgtaccaaaaccttcagctt
gcaatcaacgagcacggttacgagagcccgaaagcaacagtagctaacgagttgatgcta
gacgtattcaaagaattccgtctaacgccaaaacagtttgatcacctagtgaatgaactg
cgcacggcgatggatcgcgttcgtactcaagaacgtttgatcatgaaagctgctgttgaa
tacggcaaaatgccgaagaaatcattcattgcactgttcacaggcaacgaatcaagcgaa
gcatggttggatgaaatcctatcatctgacaagccatacgctgaaaaaatcaaacgtagc
gaagaagaaatccgtcgttcaatcactaaactaaaaatgattgaagaagagacttctcta
aacgttcaaaacattaaagacatcagccgtcgcatgtctatcggtgaagcaaaagctcgc
cgtgcgaagaaagagatggttgaagcgaacttacgtctagtaatttctatcgcgaagaaa
tacaccaaccgtggtctacagttcttggatctaatccaagaaggtaacatcggtctgatg
aaagcggtagataagttcgaataccgtcgtggttacaagttctcgacttacgcaacgtgg
tggatccgtcaggcaatcactcgttcaatcgcggaccaagcacgtacaattcgtattccg
gtacacatgatcgaaacgatcaacaagctaaaccgtatctctcgccaaatgctgcaagag
atgggtcgtgagccgctaccggaagaactggcagagcgcatgcagatgccagaagacaag
attcgtaaagtactgaaaatcgctaaagagccaatctctatggagacaccaatcggtgac
gacgaagattcgcatctaggtgatttcatcgaagatactacgctagaactaccgctagat
tctgcaactgcgacaagcctgaaaatggcaacaaaagacgtacttgcaggcctaacgcca
cgtgaagcaaaagttcttcgtatgcgctttggtatcgacatgaacactgaccacactcta
gaagaagttggtaagcagttcgacgttacccgtgaacgtatccgtcagatcgaagcgaaa
gcactacgtaaactacgtcacccaagccgctcagaaacactgcgcagcttcctagacgag
taa
DBGET
integrated database retrieval system
