Vibrio owensii: A9237_09700
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Entry
A9237_09700 CDS
T04844
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vow
Vibrio owensii
Pathway
vow03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vow00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9237_09700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vow03019
]
A9237_09700
03016 Transfer RNA biogenesis [BR:
vow03016
]
A9237_09700
Enzymes [BR:
vow01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
A9237_09700
Messenger RNA biogenesis [BR:
vow03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
A9237_09700
Transfer RNA biogenesis [BR:
vow03016
]
Prokaryotic type
tRNA degradation factors
A9237_09700
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
AQW58331
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All DBs
Position
1:2122904..2125396
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AA seq
830 aa
AA seq
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MSDNIPNDPFADRESKNYENPIPSREFITEFLQQAGVPMNRNDLFEALKLEGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSVGKDNDIVLPHH
QMKHIIHGDYVLVQPTDNSKRGRREGRLVRVLEERNTQIVGRFFLEYGYSYVVPDDSRIS
QDILIPNEHKAGARMGNVVVIEITDRGSRSRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PHDWPAAVDKQIENLGEEVPEEAKEGRVDLRDLPLVTIDGEDARDFDDAVYCEKKKSGGW
RLWVAIADVSYYVRTDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISETGKLSGYKHYEAVMNSHARLTYNKVGAILEGDEELRMRYHAVVPHLEELHAM
YKVLKEARDNRGAIEFETVEAKFIFNADRKIESIEPVIRNDAHKIIEECMILANIASASY
VEKAKEPALYRVHESPGELRLQGFRDFLSELGLDLKGGLEPSPTDYADLVKQIAERQDKE
LIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKEEGRN
QDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVADWLKCEYMQDHVGDELDGVIA
NVTSFGFFVRLTELHIDGLVHISTLANDYYQFDPIGQRLIGESFGNIYRLGDAVKVKVLA
VNLNDKQIDFELIETSRKLRGKGKTAKKRAADAKRKAKEKKRAATKGGTRAIPAIEPTKR
PESAEAEKPRKNGAKRSDTEGAKKPKVKKARKKKPHSKPRKTKRTKSDAE
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacaatattccaaacgatcctttcgcagatcgtgaatccaaaaattacgaaaac
ccaattccaagccgagagttcatcaccgagtttttgcagcaagctggtgtgccgatgaat
cgcaatgatttgttcgaagcattaaagctagaaggtgaagaacaatacgaaggtttgcgc
cgtcgactgcgagcaatggagcgtgatggacagctcgtgtttacacgtcgtcagtgctat
gcgctaccagaaaaactagagatggtgaaaggttacgtaattggccacaaagatggtcat
ggttgggttcgtcctgaaggcagtgtcggcaaggataatgacattgtactgccacaccat
cagatgaagcacatcatccatggtgattacgtgttggtgcaaccaactgataatagcaag
cgtggtcgtcgtgaaggtcgtcttgttcgcgtgttagaagagcgcaacacgcagatcgta
ggtcgtttcttcttagagtacggctactcatacgttgtgcctgatgactctcgtatcagc
caagatattctgatcccaaatgagcacaaagcaggtgctcgtatgggcaatgtggtcgtg
attgagattactgatcgcggctctcgctcacgtggcatgatgggtaaagtggttgaagtt
cttggcgagaacatggcgccgggcatggaaacgcaaatagcaatccgcacccaccaaatt
ccacacgattggccagcagccgtcgataaacagatcgaaaatctgggcgaagaagttccg
gaagaagcaaaagaaggtcgtgtcgatttacgtgacttgccactagtaaccattgatggc
gaagacgctcgtgactttgatgatgcggtttactgtgagaagaaaaagagcggcggttgg
cgtctatgggtcgcgattgctgacgtaagttactacgtacgtacagactctgcgctggac
aaagaagccatcaaccgtggtaactcggtgtacttcccatcgcaagtagtgccaatgcta
cctgaagtactatcaaacggcttatgttcacttaacccacaagttgatcgtctgtgtatg
gtgtgtgaaatgaccatctcagagacgggtaaactatcgggctacaagcactacgaagcc
gtgatgaactcgcacgctcgtctgacttacaacaaagtgggcgcgattctagaaggggat
gaagagctacgcatgcgttatcacgctgtcgttcctcaccttgaagagctgcacgcgatg
tacaaagtacttaaagaagcgcgtgataaccgtggtgcgattgaatttgaaaccgttgaa
gctaagttcatcttcaacgcggatcgtaagattgaaagcatcgagccagtgattcgtaac
gacgcacacaagatcatcgaagaatgtatgatcctagcgaacatcgcttcagcgtcttac
gttgagaaagcgaaagagccagcgttgtaccgtgttcacgaatctccgggtgaactgcgc
ctgcaaggtttccgtgacttcctcagtgagctaggtctggatctgaaaggtggtctagag
ccatcaccaaccgactacgctgatttggtaaaacaaatcgcagagcgtcaggacaaagaa
ctgattcaaaccatgttgctgcgctcaatgaagcaagcggtctacaacgcagacaatgcc
ggtcactttggtctagcgctgaaacgttacgcacacttcacgtcgccaattcgtcgttac
ccagacctactgttgcaccgcgcaatcaagtacctgattgctaaagaagaaggtcgcaac
caagatcgttggacgccaactggcggttaccactactcgtttgacgacatggacttttac
ggtgagcaatgttcgatgacagagcgccgtgcagacgacgcaactcgtgaagtggctgat
tggttgaagtgtgaatatatgcaagaccatgttggcgacgagctagatggtgttattgcc
aacgtaaccagctttggtttctttgttcgtctgactgaactgcatatcgatggtttggtg
cacatttcgacgctagcgaacgactactaccaatttgatcctattggtcaaagacttatc
ggtgaaagcttcggtaacatctatcgcctaggtgatgcggtgaaagtgaaagtgcttgcg
gttaacttaaatgacaagcaaattgactttgaattaatcgaaacaagccgtaagctacgc
ggcaaaggtaagactgcgaagaaacgcgcagcggatgccaaacgcaaagcgaaagagaaa
aagcgtgcggcaacgaaaggcggcactcgtgcaataccggcgattgaaccaaccaagcga
ccagaatctgctgaagcagaaaaacctcgcaaaaatggagcaaaacgcagtgacactgaa
ggtgctaaaaagccgaaagtgaaaaaagcacgcaagaaaaagccacacagtaagccgaga
aagactaagcgtactaagagcgacgctgagtag
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