Vibrio owensii: A9237_12160
Help
Entry
A9237_12160 CDS
T04844
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
vow
Vibrio owensii
Pathway
vow03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vow00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
A9237_12160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vow03400
]
A9237_12160
Enzymes [BR:
vow01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
A9237_12160
DNA repair and recombination proteins [BR:
vow03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
A9237_12160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
SLFN-g3_helicase
ResIII
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AQW58758
LinkDB
All DBs
Position
1:2655144..2658782
Genome browser
AA seq
1212 aa
AA seq
DB search
MAQMSVPTPLQTMTFPLHGARLIEASAGTGKTFTIAGLYLRLLLGHGTAETKHRVPLTVD
QILVVTFTEAATAELRDRIRARIHDARIAFARGKSSDPVIQPLLEEIEDHKQAAEILLQA
ERQMDEAAVYTIHGFCQRMLTQNAFESGSRFNNEFVTDESHLKAQVVADYWRRNFYPLPF
ALAGEVRQLWGSPSDLLYDISNYLTGAPLSLSVPAMQGSLADLHEQNLKQIDVLKAQWRD
SQDDFLALISDSDVNKRSYTKKSLPTWLEAVNAWAATETTGYDYPDKLEKFAQNVLLEKT
PKGTAPQHSVFEAIETFLANPISLKAPLLAHAIEHCRVMLAKAKNQKQWLSFDDLLTQLS
ASIDTDETALLTERIRTLYPVAMIDEFQDTDPLQYSIFSRIYLDNPECGLFMIGDPKQAI
YGFRGADIFTYIKARNQVSAHYTLGTNWRSSADMVLAVNQIFALPDSPFIYDSDIPFHSV
DYSPSADKRVWTMGGQKQPALTYWLQEAEDKPLPKGEYLTAMAEATASQIQTILTAAQQG
QACLVDGEKQKPVKAGDIAVLVRTGSEGRMVKQALADQGIASVYLSNRDSVFTSSVAQDL
QRLLQAVLTPENDRALRASLASELFALDAASLDALNNDETVWENAVNEFKEYRKLWVQRG
VLPMLRAVISKRHIAERLLEEGASSQSENGERVLTDLMHIGELLQQASNELDSDHGLLRW
LAQSISDAEHGLGGSDDQIQRLESERNLVQIVTIHKSKGLEYDLVFLPFVFGYREASEAK
FYDAENDRTVLDITGNDASLKQADKERLAEDLRLIYVALTRAVYACFIGASPLRNGRSTK
EPTGVHHSAIGYLVQNGQEGGINDLFVGLKKQQENLDNVVICDPPKQHDEMYVAEQTELE
ALTAKELQNPIDRNWRITSYSGLVKQGSHHAEHDATIEITGFDIDSSEEQDEAELVEPER
SIFNFPRGARPGTFLHSLFEEIEFTQPATTEENTQIILGLMESEQLDEEWLPILQQLIDT
VLATPLDSKALLLNQKGPAQRLVEMEFLLPIEVLSAPALNRVIQRHDPLSAKAGDLGFQT
VQGMLKGFIDLVFEHQGKYYVLDWKSNHLGDDVFHYHGDALKSAMADHRYDLQYQIYALA
LHRFLRSRLPNYDYEQHFGGVYYLFLRGMDGQSDHGIFSAKPTFEFLQEMDHLIDGQAPD
TRSSESGQMELI
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaatgtcagttccaactccactgcaaactatgacttttccactgcatggtgca
aggctaattgaagcttcggcgggtacgggtaaaacctttaccatcgcgggtttgtatctg
cgactcctactagggcatggcactgccgagacgaagcaccgcgtgccgttgaccgtggat
caaattctggtggtgacctttacagaggctgcaacggcggagctgcgtgatcgtattcgt
gcgcgtattcacgacgcgaggatcgcattcgctcgcgggaaaagctcagatcctgtgatt
cagcctttgttggaagaaattgaggatcataagcaagccgctgagatccttttgcaagca
gagcgccaaatggatgaagccgcggtgtacaccattcacggtttttgccaacgcatgctg
acgcaaaacgcattcgaatccggtagtcgtttcaataatgagtttgtgacagacgaaagc
catcttaaagcgcaagtcgttgccgattactggcgtcgtaacttctaccctctgccattc
gctttggctggagaagttcgccaactctggggctcgccatcggatctgttatatgacatc
agcaactacctcacaggcgcgccgctaagtctctctgttcctgcaatgcaaggtagtctt
gccgatttgcatgagcaaaacttaaagcaaattgacgttttgaaagcccagtggcgtgat
agccaagatgatttcctcgcgttgatttctgattccgacgtcaacaaacgcagctacacc
aaaaagtctttgccgacatggttagaagcggtcaacgcatgggctgcgacagaaaccaca
ggctatgactatccagataagctggagaagttcgcccagaatgtgttacttgagaaaacc
ccgaaaggcactgcgccacagcactctgtgtttgaggcgattgaaactttccttgccaac
ccaatcagtttaaaagcgccgctattggctcatgcgattgagcattgtcgcgtgatgctg
gcaaaagcaaaaaatcagaaacaatggttgtcattcgatgacttgctgactcagctttct
gcctcgattgataccgatgaaactgcactactgacagagcgcattcgcacgctttatccg
gttgcgatgatcgatgaattccaagataccgaccctctgcaatacagtattttcagccgc
atttatttagataaccctgagtgcggtttgtttatgatcggtgacccgaaacaggcgatt
tatggtttccgtggcgcggatatctttacctacatcaaggctcgtaaccaagttagtgct
cactacacgcttggcaccaactggcgctcaagtgccgatatggtattggcagtgaaccag
atttttgctctgccagatagcccgtttatttacgactccgacattccattccattctgtg
gattacagcccaagcgctgacaaacgcgtttggaccatgggtggtcaaaaacagcctgca
ctgacttattggctgcaagaagcggaagataaacctctgccaaaaggtgaatatcttacc
gctatggcagaggcgacagcgagccaaattcaaaccattttaaccgcagcgcaacaaggc
caagcgtgtctggttgatggcgaaaagcagaagccagttaaagcgggcgacattgcagta
ttggtgcgaacgggtagcgaaggtcgcatggtcaaacaggcgttagcagaccaaggcatt
gctagtgtgtatttgtccaaccgcgatagtgtgtttaccagttccgtcgcacaagactta
cagcgtttgctgcaagcggtattaacaccagaaaacgacagagcactgcgcgccagccta
gcatcagaattgttcgctctggatgctgccagtttagatgcgcttaataacgacgaaacc
gtgtgggaaaacgcggttaacgagttcaaagaataccgcaaactttgggtgcaacgtggt
gtgctacctatgctgcgtgcagtgatcagtaagcgtcatattgctgagcgtctgctagaa
gaaggggcgagctcacagagcgaaaacggtgagcgagtgcttaccgatctgatgcacatt
ggtgagttactgcagcaagcgagcaacgaattagacagcgaccacggcttgctgcgttgg
ttggcgcaatccatcagcgatgcagaacatgggctgggtggcagcgatgatcaaattcag
cgtttggaatcagagcgtaacttggtgcaaatcgtcaccattcacaaatccaaaggtctg
gaatatgacttggtctttctgccatttgtgtttggttaccgagaagcgagtgaagccaaa
ttctacgacgctgagaacgaccgcactgtacttgatatcacgggcaatgatgcgtcgtta
aaacaggcagataaagagcgccttgctgaagacttgcgcctcatctatgtagcgctaacg
cgtgccgtgtatgcctgctttattggtgcttcaccactgcgcaatggtcgctcaaccaaa
gagccaaccggcgtgcatcacagtgcgattggttacttggtgcaaaatggtcaagaaggc
ggcatcaacgacctgtttgtaggactgaagaagcagcaagagaatctcgataacgtggtg
atttgtgatcctccaaagcagcacgacgagatgtatgttgcggagcaaaccgagttagaa
gcgttgacagctaaagagctgcaaaacccaattgatagaaactggcgaatcaccagttac
tcgggcttagttaaacaaggttctcatcatgctgaacatgacgcgacgattgaaatcacc
ggttttgatatcgactcttcagaagagcaagatgaagccgaattggttgagccagaacgc
tctatcttcaacttcccgcgtggcgcacgtccgggtaccttcctgcacagtttatttgag
gaaatagagtttactcaacctgcgacgacggaagagaacacccaaatcatccttggctta
atggaaagtgagcagcttgatgaagagtggctgccaatcctgcaacagttgattgatacc
gtgctggcaacgcctttggatagcaaagcactgctgctcaatcagaaaggtccggcgcaa
cgtttggttgagatggaattcttactgccgattgaagtgctgtctgcaccagcattgaac
cgtgtgattcagcgtcatgatccgctctctgccaaagcgggcgatctgggtttccaaacc
gtgcaaggcatgttgaaaggctttattgacttggtgtttgagcaccaaggcaaatactac
gtccttgactggaaatcgaaccacttaggtgatgatgtattccattaccatggcgatgcg
ttgaagtcggcgatggcggatcatcgctacgatctgcaataccaaatctatgctttggcg
ctgcatcgcttcttacgcagcagattgccaaattatgattatgaacagcactttggcggt
gtttattacctgttcttgcgtggtatggatgggcaaagtgatcatggtattttttctgcc
aagccaacctttgaatttttacaagagatggatcatttgattgatggtcaagcacctgac
acgcgatccagcgaatcgggtcagatggagttaatttga
DBGET
integrated database retrieval system
