Vogesella sp. XCS3: LCH97_00220
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Entry
LCH97_00220 CDS
T07617
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vox
Vogesella sp. XCS3
Pathway
vox03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LCH97_00220 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vox03400
]
LCH97_00220 (mfd)
Enzymes [BR:
vox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCH97_00220 (mfd)
DNA repair and recombination proteins [BR:
vox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LCH97_00220 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
UB2H
AroM
Glyco_tran_WecG
CTE_SPB4
Motif
Other DBs
NCBI-ProteinID:
UDM17141
LinkDB
All DBs
Position
complement(38751..42146)
Genome browser
AA seq
1131 aa
AA seq
DB search
MTTTLRQWPANGQKTLLALPAGSADSALIAALPDSGQPVLILTASAQDAQRLKAELPFFR
PAWRIALLPDWETLPYDHFSPHSDLVSERLATLWQIRNGECDVVIAPLTTAITRLSPMSF
LLGRTFWLKLKQRLDVDRLRADMVTAGYQHVSQVVAPGEFSIRGGLVDLFPMGSALPYRI
DLFDDEIDSLKTFDPDTQRTLYPVPEIRLLPAREYPTDEAAVTAFRQHYREKIDGDPSKS
RIYKDVSNNLWPAGIEYYLPLFFDNTATLFDYLGDTAQLILHGNLMAAAEDFWRDAQSRH
NMAGGNPERPVLAPAELFLRPDELMGAIKPYARLDMSGSGDCGYLPLPELAVDRRADNPL
TRLADFTRRYSGRVLIAAESLGRRETLQHFLQEHGIKAQPVDSWQAFADSKVALGLIHAP
LFNGFELHDAGIAIVTEAELYQHIARSHGKRRKTAANNDAMLRDLAEVKVGDPVVHEAHG
IGRYMGLVSIDLGEGETEMMQLEYAEGATLYVPVAQLQLISRYAGHASDNVQLHRLGSPA
WDKAKKKAAEKARDTAAELLNLYAQRAAREGHSFTLNHHDYDAFAAGFGFEETPDQATAI
EAVIHDMTSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLVPTTLLAEQHFQNF
SDRFADWPVRIAELSRFKSAKEVKQAMEGLAAGSIDIVIGTHKLVQPDVSFKNLGLVIID
EEHRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLREFSAITTAPSRRLAVKTF
VSPINNGIIREAMLREFKRGGQVFFLHNEVDTIENMREKLAELVPEARIAVAHGQLRERE
LEQVMRDFLQVRFNVLLCSTIIETGIDIPNANTILINRADKFGLAQLHQLRGRVGRSHHQ
AYAYLLTGEGMTRDAQKRLEAIQASEELGAGFYLAMHDLEIRGAGEVLGEGQSGEMQEVG
FSLFTEMLKQAVRDLKKGREPDLDAPLGVTTEINLHSPALLPDDYCPGVHERLVIYKRLA
TCDSEDDIDTIHEELIDRFGLPPQNVKTLIESHRLRLAAREMGIQKLDASEVAIQLTFVP
NPPIDPMKIIQLIQSKRNYKLAGQDKLRVESPIPDVAMRIVRVKELMKELS
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccactttgcgacagtggcccgcaaacgggcagaagaccctgctggccctgcca
gctggtagcgccgacagcgccctgatagccgcgctgccggatagcggccaacctgtactg
atcctgaccgccagcgcacaggatgcccaacgcctaaaggcagagctgcccttcttccgc
ccggcgtggcgtatcgccctgctgcccgactgggaaaccctgccctacgaccatttttca
ccgcacagcgacctggtctccgagcggctggccacgctgtggcaaatccgcaatggtgaa
tgcgatgtggtgattgcgccgctcaccaccgccatcacgcggctatcgccgatgagcttt
ctgctgggccgcaccttctggctcaaactgaaacagcgcctggacgtagaccgcctgcgc
gccgacatggtcaccgccggctaccagcatgtctcgcaagtggtggcacctggcgagttc
tcgatacgcggcgggctggtagacctgttccccatgggcagcgcgctgccctatcgcatc
gacctgttcgatgacgaaatcgacagcctgaaaaccttcgaccccgacacccagcgcacg
ctgtacccggtgccggagatccgcctgctgccggcacgcgagtaccccaccgacgaagcc
gccgtcaccgcgtttcgccagcactaccgcgaaaaaatcgacggtgacccgtccaagagc
cgtatctacaaggatgtgtccaataatctgtggccggccggtatcgagtactacctgcca
ctgttcttcgataacaccgccaccctgttcgactacctgggcgacacggcacagctgatc
ctgcacggcaatttaatggccgctgccgaggacttctggcgcgacgcgcaaagccgacac
aatatggccggcggcaatccggagcgcccggtactggccccggccgagctattcctgcgc
ccggacgaactgatgggcgccatcaaaccctacgcccggctggatatgtccggcagcggc
gactgcggctacctgccgctacccgagctggcagtagaccgccgcgccgacaacccgctc
acccggcttgccgacttcacccgccgctacagcggccgcgtgctgattgctgctgaaagc
ctgggccggcgcgaaaccttgcagcactttctgcaggaacacggcatcaaggcacagccg
gtagacagctggcaggcctttgccgatagcaaagtcgcgctgggcctgattcacgcgccg
ctgtttaacggtttcgagctgcacgacgccggtatcgccatcgtcaccgaggccgagctg
taccagcacatcgcccgcagccacggcaagcgccgcaaaacagcggccaacaacgacgcc
atgctgcgcgacctggccgaggtgaaagtgggcgacccggtggtgcacgaagcgcacggc
atcggccgctatatgggcctggtgtctatcgacctgggcgaaggcgaaaccgagatgatg
cagctggagtacgccgaaggcgccacgctgtacgtgccggtagcgcagctgcagctgatc
agccgctacgccggccacgccagcgacaatgtgcagctgcaccgcctgggcagcccggcc
tgggacaaggccaagaagaaagccgccgaaaaagcccgcgataccgccgccgagctgctg
aacctgtacgcccagcgcgccgcgcgcgaaggccacagctttacgctgaaccaccacgat
tacgacgcctttgccgccggtttcggctttgaagaaacccccgaccaggccaccgctatc
gaagcggtgatccacgacatgaccagcggccgccccatggaccgcctggtgtgcggcgac
gtgggctttggcaaaaccgaagtcgccctgcgcgctgcttttgtggcggtgatgggtggc
aagcaggtggcggtgctggtgcccaccacgctgctggccgagcagcatttccagaacttt
agcgaccgctttgccgactggccggtacgcattgccgagctgtcgcgcttcaagagcgcc
aaagaagtgaagcaggcgatggaagggttggccgcgggcagcatcgatatcgtcatcggc
acccataaattggtgcagccggacgtcagcttcaagaacctggggctggtgattatcgat
gaggaacaccgctttggcgtgcgccagaaagagcagctcaaacgcctgcgcgccaatgtg
gacgtactcacccttaccgccacgccgattccgcgcacgctgtccatggcgctggaaggc
ctgcgcgagttctcggctatcaccaccgcgccgtcgcgccggctggcggtcaaaaccttc
gtcagccccatcaacaacggcattatccgcgaagccatgctgcgcgagttcaaacgcggc
ggccaggtgttcttcctgcacaacgaggtagacaccatcgagaacatgcgcgaaaagctg
gccgagctggtgccggaggcgcgcattgccgtggcccacggccagctgcgcgaacgcgag
ctggaacaggtgatgcgcgacttcctgcaggtacgcttcaacgtactgctgtgctccacc
attatcgaaaccggcatcgacatccccaacgccaacaccatcctgatcaaccgcgccgac
aaattcggcctggcccagctgcaccagctgcgcggccgggttggccgcagccaccaccag
gcctacgcctacctgctcaccggcgaaggcatgacgcgcgacgcgcagaagcggctggaa
gccatccaggcatcggaagagctgggcgccggtttctacctggccatgcacgacctggaa
atccgcggcgccggcgaggtgctgggcgaggggcaatcgggcgagatgcaggaagtgggc
ttcagcctgtttaccgaaatgctgaagcaagccgtgcgtgacctcaaaaagggccgcgag
ccggacctggacgcgccattgggcgtgaccaccgaaatcaacctgcacagccccgccctg
ctaccggacgactactgccccggcgtacacgagcggctggtgatctacaaacggctggcc
acttgcgacagcgaagacgacatcgacaccatccacgaggagctgatcgaccgtttcggc
ctgccaccacaaaacgtaaaaacgctgatcgaaagccaccggctgaggttggccgcacgc
gagatgggtatccagaaactggacgccagcgaagtggccatccagctcaccttcgtgccc
aacccgcccatcgacccaatgaagatcatccagctgatccagagcaagcgtaactacaag
ctggcaggccaggacaagctgcgcgtggaaagcccgataccggatgtggcgatgcgtatc
gtgcgcgtgaaggagctgatgaaagagctgagctaa
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