Vogesella sp. XCS3: LCH97_01175
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Entry
LCH97_01175 CDS
T07617
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vox
Vogesella sp. XCS3
Pathway
vox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCH97_01175 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vox03019
]
LCH97_01175 (rne)
03009 Ribosome biogenesis [BR:
vox03009
]
LCH97_01175 (rne)
Enzymes [BR:
vox01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LCH97_01175 (rne)
Messenger RNA biogenesis [BR:
vox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LCH97_01175 (rne)
Ribosome biogenesis [BR:
vox03009
]
Prokaryotic type
rRNA processing factors
LCH97_01175 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
UDM17317
LinkDB
All DBs
Position
228431..231379
Genome browser
AA seq
982 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIETVGKEQRKGNIYKGTITRIEPSLEACFVDY
GTERHGFLPFKEVSRSYFQNYDGGRPRIQDVLREGMEVVVQVEKDERGNKGAALTTYVSL
AGRYVVLMPNNPRGGGVSRRIEGEERQELKDLLSQLEVPNGMSLIARTAGIGRSLEELQW
DLNYLLQLWRAVDGAAGAQSAPFLILQEGSLVIRAIRDYYQPDIGEILIDTEEIYEQARQ
FMSHVMPNNVGRVKLYKDPVPLFSRFQIEHQIETAFSRAVTLPSGGAIVIDHTEALVSVD
VNSARATKGSDIEDTAFRTNLEAAEEIARQLRLRDLGGLIVIDFIDMESQKNQRDVENRL
REVLKHDRARVQMGKLSRFGLLELSRQRLQPSLGETSHVPCPRCHGIGFIRGIESSALHI
LRIIQEEAMKENTGAVHAQVPVDVATFLLNEKRAEIYSIEARLDVAVVLIPNLHLETPHY
KIVRVRHDDLAEVSESPSYRRVELPEEDAAHPFGQEKPKVERQEAAVKGITPAQPAPMAA
DPVPAAAPAAPVAAPVARRDEPGLIAKIVGWFKGLLGEEPAVAAPAPVAEVKKPQREARN
PRQRNDRRPGARRDREDGRGGRDENRANREPREERQPRQADEPRRRQPADMPQREEREPR
SEQQPRQERAPRREREPREPREPRENVQRAELGDAAPKERETAPRNERRRERNRDVSREA
KEQVQAPQLAEELQPVALVPVQEETAEAVADAAVVAGDAAGAEPRERRRRRSRRDRRDDT
VVAEQGEVVAEAAADAVSEVAEQVVAAVAQPVAEAAPVAVETAVVEAVTEPVAAVEPVAV
VAESAVVEVVEEVAAAPVQPQVEPVVPAEQVVVEAVAETPAQAKEVAVIAVVEAQPVEQA
VVEAVAAPETAVVAEPVVAVAAEPVADLGGLVLVTTRPASELPVVEVAPVEVKGKRRREV
VREVAEVAPLELVQVQTARDDS
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgcttttcaatgcgacgcaggcagaagaactgcgcgtcgccattgtcgat
gggcaaaaactcatcgacctcgatatcgagacagtaggtaaagaacagcgcaaagggaac
atctacaaaggcacgatcacccgcatcgagccttccctggaagcttgttttgtcgattac
ggcaccgagcgtcacggtttcctccctttcaaagaagtttcccgtagctatttccagaac
tacgacggcggccgcccgcgcatccaggatgtgctgcgcgaaggcatggaagtagtggtt
caggtagaaaaagacgagcgtggcaacaagggcgccgccctgaccacttacgtcagcctg
gctggccgctacgtggtgctgatgccgaacaacccgcgtggtggtggcgtgtcgcgccgc
atcgaaggcgaagagcgtcaggagctgaaagacctgctgtcgcagctggaagtgcccaac
ggcatgagcctgatcgcccgtaccgccggtatcggccgcagtctggaagagctgcaatgg
gatctgaactacctgctgcaactgtggcgtgccgtagacggcgccgcaggtgcgcagtct
gcgccgttcctgattctgcaggaaggcagcctggtgattcgcgccattcgcgattactac
cagcctgacatcggcgaaatcctgatcgacaccgaagaaatctacgagcaggctcgccag
ttcatgagccacgtgatgcccaacaacgttggccgcgtgaaactctacaaagacccggtg
ccgctgttctcgcgtttccagatcgaacaccagatcgaaaccgctttctcgcgtgccgtt
accctgccgtccggcggtgccatcgtgatcgaccacactgaagcactggtgtcggttgac
gtgaactcggcccgtgccaccaagggttctgatatcgaagacacggccttccgtaccaac
ctggaagccgccgaagaaatcgcccgtcagctgcgtctgcgcgacctgggcggcttgatc
gtgatcgacttcatcgacatggaaagccagaagaaccagcgtgacgtggaaaaccgtctg
cgcgaggtgctgaagcacgaccgtgcccgtgtgcaaatgggcaagctgtcgcgtttcggc
ctgctggagctgtcgcgtcagcgcctgcagcctagcctgggtgaaaccagccacgtgccg
tgcccgcgttgccacggtatcggcttcatccgcggtatcgagtcgtccgccctgcacatc
ctgcgcatcatccaggaagaggcgatgaaggaaaacaccggtgcggtacacgcacaggtg
cctgtggatgtagcgaccttcctgctgaacgagaagcgtgccgagatctactccattgaa
gcccgtctcgacgtggccgtggtgctgattcctaaccttcatctggaaaccccgcattac
aagatcgtgcgcgtacgccacgacgacctggctgaagtcagcgagtcgccaagctatcgc
cgtgtcgagctgccggaagaagacgcagcgcacccgtttggccaggaaaagccgaaggta
gagcgccaggaagccgcggtgaaaggtattaccccggcccagccagcccctatggcggct
gatcccgtgcctgccgctgcaccagccgcccctgtggctgcgccggttgcccgtcgtgac
gagccaggcctgattgccaagatcgttggctggttcaagggtttgctgggtgaagagccg
gctgtcgccgcgccagccccggtggccgaagtgaaaaaaccgcagcgcgaagcgcgcaac
ccgcgccagcgtaacgatcgtcgcccgggtgcccgccgtgatcgtgaagatggccgtggc
ggccgcgacgagaatcgtgccaaccgcgagccgcgcgaagagcgtcagccgcgtcaggca
gacgagccgcgtcgtcgtcagcctgccgatatgccgcagcgcgaagagcgcgagccgcgc
agcgagcagcagccacgccaggagcgcgcaccgcgccgcgaacgcgaaccgcgtgagcca
cgcgagccgcgtgaaaacgtacagcgtgccgagctgggcgatgccgcgccgaaagagcgt
gaaaccgcaccgcgtaacgagcgccgccgcgaacgtaaccgtgacgtctcgcgtgaggcc
aaagagcaggtgcaggcaccgcagttggctgaagagctgcagccggtagcgttggtaccc
gttcaggaagaaaccgccgaggctgtggctgatgctgcagtggtggcgggtgacgcagcc
ggtgccgagccgcgtgagcgccgtcgtcgccgttcccgtcgtgaccgtcgtgacgatacg
gtagtggcagagcagggcgaggtggtggcagaagctgcagcagacgctgtgtccgaagtt
gccgagcaagtggtggccgctgtagctcagcctgtggcagaggccgcgccggtggccgtg
gaaactgctgttgtcgaggctgtaacagagcctgtggcagcggtagagcctgttgccgtg
gtagcagaatcggcagttgttgaggtggtggaagaagtggctgcagcaccagtgcagccg
caggtcgagccggtggtgcctgctgagcaggtggtggtagaggctgtagccgaaacgcca
gcgcaggctaaagaggtggctgtgatcgctgtggttgaagcacaacctgtggagcaggca
gtggttgaagctgttgcggcacctgaaacagctgtggttgccgagccggtagtggcagtg
gcagccgagccagtagctgatctgggtggtttggtgttggttaccacacgtccggcatcc
gagctgccggtagtggaagtggcgcctgtggaagtaaaaggcaagcgccgtcgcgaggtg
gtgcgcgaggtggctgaggtggcaccgctggagttggtgcaggtacaaactgcacgcgac
gatagctaa
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