Vogesella sp. XCS3: LCH97_01300
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Entry
LCH97_01300 CDS
T07617
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vox
Vogesella sp. XCS3
Pathway
vox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCH97_01300 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vox03019
]
LCH97_01300 (pnp)
03016 Transfer RNA biogenesis [BR:
vox03016
]
LCH97_01300 (pnp)
Enzymes [BR:
vox01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LCH97_01300 (pnp)
Messenger RNA biogenesis [BR:
vox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LCH97_01300 (pnp)
Transfer RNA biogenesis [BR:
vox03016
]
Prokaryotic type
tRNA degradation factors
LCH97_01300 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
KH_1
S1
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
KH_NusA_2nd
S1_RRP5
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
UDM17336
LinkDB
All DBs
Position
254583..256724
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AA seq
713 aa
AA seq
DB search
MFNKITKSFQYGKHTVTLETGEVARQASGAVLVSVEDTVVLVSVVGSKNVKPGQDFFPLT
VDYLERTYAAGKIPGGFFKREGKQSEKEILTSRLIDRPIRPLFPEGFYHDVQIVATVMSL
NPEVDSDVPAMIGASAALAISGLPFNGPIGAVRVGYANGEYILNPTKTELLTSEMDLVVA
GTERAVLMVESEAKELSEAVMLGAVVFGHEQMQAAITAINEFADEVNPVMWDWEAPAKNE
ALIAQIRDISGEAIANAFRIRQKGARSEALNAAWAAVKAALITEDTDTLVANEIKGIFKS
LEAEIVRGQILSGEPRIDGRDTRTVRPIAIRTGVLPRVHGSSLFTRGETQAIVTTTLGTK
QDEQIIDALAGEYTDRFMLHYNFPPYSTGEAGRMGPPKRREIGHGRLAKRALAQVLPSET
EFGYTMRVVSEITESNGSSSMASVCGGCLALLSAGVPLKAHVAGIAMGLILEGNRFAVLT
DILGDEDHLGDMDFKVAGTAAGVTALQMDIKIQGITKEIMQIALEQAKDGRLHILGHMKE
AIEGPQELSTHAPRLYVMKINPEKIREVIGKGGETIRAITKDTGCEINIEEDGTITIASV
SNEGAEAAKKRIEEITAEVEVGKVYEGPVVKILDNNVGAIVSIMPGKDGLVHISQIAHER
IKNVSDYLKEGQIVKVKAIEMDDRGRVRLSIKALLDNPAAPAAQGDFGLKSGA
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
gtgtttaacaaaattaccaagtcgttccagtacggcaaacataccgttaccctggaaacc
ggcgaagtagcgcgccaggcctccggcgcggtactggtgtcggtagaagataccgtggtt
ctggtttctgttgtcggctccaaaaacgtgaagccgggccaggacttcttcccgctgacc
gtggactacctggagcgtacttacgctgccggcaagatcccgggcggtttcttcaagcgt
gaaggcaaacagtccgaaaaagaaatcctgaccagccgcctgatcgatcgcccgattcgc
ccgctgttcccggaaggcttctaccacgacgtacaaatcgtggccaccgtgatgtcgctg
aacccggaagtggattccgacgtgcctgccatgatcggtgcctccgctgcgctggccatt
tccggcctgccgttcaacggcccgatcggtgcggttcgcgtaggttacgccaacggcgaa
tacatcctgaacccgaccaaaaccgagctgctgacctcggaaatggacctggtggttgcc
ggtaccgagcgtgccgtgctgatggtcgagtccgaagccaaagaactgtccgaagccgtg
atgctgggtgccgtggtattcggccacgagcaaatgcaggctgccatcaccgccatcaac
gagtttgctgacgaagtgaacccggtaatgtgggactgggaagcaccggccaagaacgaa
gcgctgatcgcccagatccgtgacatttccggcgaagccattgccaacgctttccgcatc
cgccagaagggagcccgctccgaagcgctgaacgctgcctgggctgccgtgaaggccgca
ctgatcaccgaagacaccgacaccctggtggctaacgagatcaaaggcatcttcaagtcg
ctggaagccgaaatcgtgcgtggccagatcctgtccggcgagccgcgcatcgacggccgc
gacacccgtaccgtacgcccgatcgctatccgcaccggcgtgctgccacgtgtacacggc
tcctcgctgttcacccgtggcgaaacccaggctatcgtgaccaccacgctgggcaccaag
caggacgagcagatcatcgacgcgctggccggcgaatacaccgaccgcttcatgctgcac
tacaacttcccgccgtactccaccggtgaagctggccgcatgggcccgccaaaacgccgc
gaaatcggccacggccgcctggccaagcgtgcactggcacaagtactgccatccgaaacc
gaattcggctacaccatgcgtgtggtatccgaaatcaccgaatccaacggctcctcgtcg
atggcttccgtgtgcggtggctgcctggcactgctgtcggccggtgtaccgctgaaagcc
cacgtggccggtatcgccatgggtctgatcctggaaggcaaccgcttcgccgtgctgacc
gatatcctgggtgacgaagatcacctgggcgatatggacttcaaggtagccggtaccgcc
gctggcgtgactgccctgcagatggatatcaagatccagggtatcaccaaggaaatcatg
cagatcgcgctggaacaagccaaagacggccgcctgcatatcctgggtcacatgaaagaa
gccatcgaaggcccgcaagagctgtccactcacgcgccgcgtctgtacgtgatgaagatc
aacccggagaaaatccgcgaagtgatcggtaaaggtggtgaaaccatccgcgccatcacc
aaagataccggttgcgagatcaatatcgaagaagacggcaccatcaccatcgcctccgta
tccaacgaaggcgctgaagctgccaagaagcgtatcgaagaaatcaccgctgaagttgaa
gtaggcaaagtctacgaaggcccggtagtgaagattctggacaacaacgtgggcgctatc
gtgtccatcatgccgggcaaagatggtctggtacacatttcgcagatcgctcacgagcgt
atcaagaacgtgtccgactacctgaaagaaggccagatcgtgaaagtaaaagccatcgag
atggacgaccgcggccgcgttcgcctgtcgatcaaggctttgctggacaacccggcagcc
ccggctgcccagggtgacttcggtctgaaatccggcgcctaa
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