Vogesella sp. XCS3: LCH97_05985
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Entry
LCH97_05985 CDS
T07617
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
vox
Vogesella sp. XCS3
Pathway
vox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCH97_05985 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vox03019
]
LCH97_05985 (pcnB)
Enzymes [BR:
vox01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
LCH97_05985 (pcnB)
Messenger RNA biogenesis [BR:
vox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LCH97_05985 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
TPR_NUP120_160
Motif
Other DBs
NCBI-ProteinID:
UDM18218
LinkDB
All DBs
Position
complement(1269239..1270603)
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AA seq
454 aa
AA seq
DB search
MIRKLISRVFDLPTGIGRNKPKPRVLSLAQHGVRRDALSHAALRVVSRLQESGHSAFVVG
GAVRDLLLGVSPKDFDVATSATPEEVHHIFRRSRIIGRRFRIVHVMMGPETIEVTTFRGG
EVGKTNETGRIMADNTYGNQSEDALRRDFTVNALFYNPTDETIIDYHHGVKDLQAKKLVM
IGQPARRYQEDPVRMLRAVRLAAKLGFEIDEHTRKPIASHAHLLKNEPPARLFDELLKLL
HSGHAYACLKKLRDEGLSRGIFPLLDAVMDEEGGEAFLKLALASTDERIRADKPVSVGFM
LAALLWAQVNNRWKARTADGEKSIAALMEAMAEVESLQDEDFAIPRRFSATMREIWALQP
RFDNRNGARPFRFLEQPRFRAAFDFYCLRAEVGDVPREMVQWWAEFQHADHADRQLLVEE
ARHAPPAANGDSAERKKRRRRRKPNARPTEGSAE
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgattcgcaaactgatcagccgcgttttcgacctgccaaccggcatcggccgcaacaaa
cccaagccgcgtgtgctatcgctggcacagcacggcgtgcgccgcgatgccctcagccat
gctgccttgcgtgtggtatcgcggctgcaagaatccggccacagtgcctttgtggtaggc
ggggcagtgcgcgacttgctgctgggcgtatcgcccaaggattttgacgtggccaccagc
gctacgccggaagaagtgcaccatatattccgccgctcgcgcattatcggccggcgcttc
cgtatagtgcacgtgatgatggggccggaaaccatcgaggtgacgaccttccgcggtggt
gaagtaggcaagaccaacgaaaccggccgcatcatggcggacaacacttacggcaaccag
tccgaagacgccttgcgccgcgactttactgtaaatgcactgttctataaccccaccgat
gaaaccatcatcgactatcaccatggggtaaaagacctgcaggcgaaaaagctggtgatg
atcggccagccggcccgccgctaccaggaagacccggtgcgcatgctgcgtgccgtgcgc
ctggccgccaagctgggtttcgagatcgacgaacacacgcgcaagccgattgcctcgcac
gcccatctgctgaaaaacgagccgcctgcgcggctctttgacgagctgctcaagctgctg
cactccggccacgcctacgcttgcctcaaaaagctgcgtgacgaaggcctgtcgcgcggt
attttcccgctgctggacgcggtgatggacgaagagggtggcgaagctttcctcaaactg
gcgttggccagcaccgacgagcgcattcgtgccgacaagccggtgtcggtaggcttcatg
ttggccgcattgctgtgggcgcaggtaaacaaccgctggaaagcacgcacggccgatggc
gagaaatccattgccgcgctgatggaagccatggccgaggtcgaatcgctgcaggatgaa
gactttgccatcccgcgccgcttctccgccaccatgcgtgaaatctgggcgctgcagccg
cgctttgacaaccgcaacggcgcccgtccgttccgtttcctggagcagccgcgtttccgt
gctgctttcgatttctactgtctgcgcgccgaagtcggcgacgtgccacgcgagatggtg
cagtggtgggccgagttccagcacgccgaccacgccgaccgccagctgctggtagaagaa
gcacgccatgcgccgccagctgccaatggcgacagtgccgagcgcaaaaagcgccgccgt
cgtcgcaaacccaatgcccgccccaccgaaggtagtgccgagtga
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