Vogesella sp. XCS3: LCH97_06110
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Entry
LCH97_06110 CDS
T07617
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vox
Vogesella sp. XCS3
Pathway
vox03030
DNA replication
vox03430
Mismatch repair
vox03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCH97_06110 (dnaE)
03430 Mismatch repair
LCH97_06110 (dnaE)
03440 Homologous recombination
LCH97_06110 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vox03032
]
LCH97_06110 (dnaE)
03400 DNA repair and recombination proteins [BR:
vox03400
]
LCH97_06110 (dnaE)
Enzymes [BR:
vox01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LCH97_06110 (dnaE)
DNA replication proteins [BR:
vox03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LCH97_06110 (dnaE)
DNA repair and recombination proteins [BR:
vox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LCH97_06110 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
UDM18237
LinkDB
All DBs
Position
1295898..1299332
Genome browser
AA seq
1144 aa
AA seq
DB search
MNAPRFVHLRLHSEFSITDGIVRLDDAIKRAVKDGMPALGMSDLMNIFGMVKFYKACRGK
GIKPIVSCDIWLENGEDRDKPFRLMLTAKNREGYRRLCELLTRAFTHNQYRGRAEIKRVW
LEEGDNSNLLCLSGAHLGDVGVAFANGNPDEARSRAEYWAQLFPGAFYLELQRTDNAQVE
NILQSTLWLAGETGLPVVATHPIQFMDPDDFKAHEARVCIAEGYTLGDKRRPRSFSECQY
FLSTEQMLERFADIPEALENTVQIARRCNINVVLGKNYLPDFPTPDGMTLNDFLVYEAKR
GLDMRLGQLYPDPAIREARRPEYDARLKFECDTIIQMGFPGYFLIVADFIQWGKANGCPV
GPGRGSGAGSLVAYSLSITDLDPLKYALLFERFLNPERVSMPDFDVDFCQENRWRVIEYT
RRKYGEEAVSQIATFGTMSSKSVIRDVGRVLDLPFGLCDKLSKLIPLEANKPLSLEKAMA
AEAQIGETIESEGAGELIELAMKLEDLTRGIGMHAGGVLIAPGKLTDFCPLYIASGDGAA
PVSMYDKDDVEQIGLVKFDFLGLRNLTIIELAQKYIKDLSGEDVDVAKLPLDDALAYKVF
ANANTTGVFQFESTGMKKMLVEAKPSKFEEIIAFVALYRPGPMDLIPDFIQRMHGAKFEY
LHPLLEPVLAPTYGIMVYQEQVMQAAQVCGGYSLGGADLLRRAMGKKKVEEMVAQRAMFV
EGAAKQGIEKAKADEIFDYMEKFAGYGFNKSHAAAYALVAYHTAWLKAHHAAAYMAATMS
TELDNTDQLKVFYDDATDNKNGLRFLPPDVNHSFYRFVPVDRKHIRYALGAIKGTGESAV
EHIVQVRESGGPFTSLFDFCHRTDKKIVNKRVIEALIRAGAFDSIEPSRALLFSNVALAM
TAAEQQAANANQGGLFDMFDDDSAPSVDMVACKPWPAAIQLAEEKIAIGFYLSGHPFSAY
EKEVRGFIRTPLAKLAPRREPQLLAGFVTGIRTKVGNRGKMAFIQLDDGTAKVEVSLFAE
AVDANRTKLKDDVVLVVEGKVSEDRFSGGMRIIAENLYELGEARSRYARSLSVQMHPRHD
VATLRNIITPYRSEDSGCPLRITYHTGKAKGDLMLPPQWGVRLDDALLMTLEDWLGDNSV
KILW
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcaccccgctttgtccatcttcgcctccattcggagttttccattaccgacggc
attgtccgcctggacgacgccatcaagcgcgccgtcaaggatggcatgccggcgctgggc
atgtccgacctgatgaacatcttcggcatggtcaagttttacaaggcctgccgtggcaag
ggcatcaagcccattgtgtcctgcgacatctggctggaaaacggcgaggaccgcgacaag
ccattccggctgatgctcaccgcaaaaaaccgcgagggctaccgccgcctgtgcgagctg
ctgacccgcgcctttacccataaccagtaccgtgggcgtgccgaaatcaagcgcgtctgg
ctggaagaaggcgacaacagcaacctgctgtgcttgtccggcgcacacctgggcgacgtg
ggtgtggcgtttgccaacggcaaccccgacgaggcgcgcagccgtgccgaatactgggcc
cagctattccccggcgcgttttatctggaactgcagcgcactgataacgcccaggtagaa
aacatcctgcagtccacgctgtggctggcgggcgaaaccggcctgccggtggtggcgacg
caccctatccagttcatggacccggacgacttcaaggcgcacgaagcacgggtgtgcatt
gccgaaggctacacgctgggcgataaacgccgcccgcgcagcttcagcgaatgccagtac
ttccttagtaccgagcagatgctggaacgcttcgccgacatccccgaagcgctggaaaac
acggtgcagattgcccgccgctgcaatatcaacgtggtgctgggcaaaaactacctgccg
gacttccccacgccggacggcatgacgctgaacgactttctggtatacgaagccaaacgc
gggctggacatgcgcctggggcagctgtacccggacccggccatacgcgaagcacgccgg
ccggaatacgacgcgcggctgaagttcgagtgcgacaccatcatccagatgggcttcccc
ggctacttcctgatcgtggccgactttatccagtggggtaaagccaacggctgcccggtg
ggcccgggccggggttccggtgccggctcgctggtggcgtacagcctcagcattaccgac
ctggacccgctgaagtacgccctgctgttcgagcgcttcctgaacccggaacgggtatcg
atgcccgacttcgacgtggacttctgccaggaaaaccgctggcgcgtcatcgaatacacc
cgccgcaaatacggcgaagaagccgtgagccagatcgccaccttcggcaccatgtcgtcc
aaatcggtgatccgtgacgttggccgcgtgctcgacctgcctttcggcctgtgcgacaag
ctgtccaagctgattccgctggaggccaacaagccgctgagcctggaaaaagccatggcc
gccgaggcgcagattggtgaaaccatcgaaagcgaaggcgccggcgagctgatcgagctg
gccatgaagctggaagacctcacgcgcggcatcggcatgcacgccggcggcgtgctgatt
gcccccggcaagctcaccgacttctgcccgctgtacatcgccagtggcgacggtgccgca
ccggtgtcgatgtacgacaaggacgacgtagaacagatcggcctggtgaagttcgacttt
ctgggcctgcgcaacctcaccatcatcgagctggcgcaaaagtacatcaaggacctgagc
ggcgaagacgtggacgtggccaagctgccgctggacgatgcgctggcgtacaaggtgttt
gccaacgccaacaccaccggcgtgttccagtttgaatccaccggcatgaagaagatgctg
gtagaagccaagcccagcaagttcgaagagattatcgccttcgtggcgctataccgcccc
ggcccgatggacctgatccccgactttatccagcgtatgcacggtgccaaattcgagtac
ctgcacccgctgctggagccggtactggcgcccacctacggcattatggtgtaccaggag
caggtgatgcaggcggcgcaggtgtgcggcggctacagcctgggcggcgccgacttgctg
cgtcgcgccatgggtaagaaaaaagtcgaggagatggtggcgcagcgcgccatgttcgta
gaaggcgcggccaaacagggcatcgaaaaagccaaggctgacgaaatcttcgactacatg
gaaaaattcgccggctacggtttcaacaaatcgcacgccgccgcctacgccctggtggcc
taccataccgcctggctcaaagcgcaccacgcggccgcctacatggccgccaccatgtcc
accgaactggacaacaccgatcagctgaaggtgttctacgacgacgccaccgacaacaag
aacggcctgcgctttttgccaccagacgtgaaccacagcttctaccgctttgtgccggta
gaccgtaaacacatccgctacgcgctgggtgccatcaagggcaccggcgagtcggcagtg
gagcacatcgtgcaagtgcgcgagtcgggtggcccgtttaccagcctgttcgacttctgc
caccgcaccgacaagaaaatcgtcaacaaacgcgtgatcgaggcgctgatccgcgccggc
gccttcgacagcatcgagcccagccgcgccctgctgttcagcaatgtggccctggcgatg
accgccgccgagcagcaagcggccaacgccaaccagggcggcctgtttgacatgttcgac
gacgacagtgcccccagtgtggacatggtggcgtgcaagccttggccggctgccatccag
ctggccgaagaaaaaatcgccatcggtttctacctgtccggccacccgttctcggcctac
gagaaagaagtgcgcggctttatccgcaccccgctggccaagctggcaccacggcgcgag
ccgcagctgctggccggctttgtcaccggcatccgcaccaaggtgggcaaccgcggcaag
atggccttcatccagctggacgatggcacggccaaggtagaagtaagcctgtttgccgag
gcggtagacgccaaccgcaccaagctgaaggacgatgtggtactagtggtggaaggcaag
gtcagcgaagaccgtttcagcggcggcatgcgcatcatcgccgaaaacctgtacgagctg
ggcgaggcgcgcagccgctacgcgcgcagcctgtcggtacagatgcacccgcgccacgac
gtggccacgctgcgcaacatcatcaccccctaccgcagcgaagacagcggctgcccacta
cgcattacctaccataccggcaaagccaagggtgacctgatgctcccaccgcagtggggc
gtacgcctggacgacgcgctgctgatgacgctggaagactggctgggcgacaacagcgtg
aagatactgtggtaa
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