Vogesella sp. XCS3: LCH97_07615
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Entry
LCH97_07615 CDS
T07617
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vox
Vogesella sp. XCS3
Pathway
vox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCH97_07615 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vox03019
]
LCH97_07615 (rnr)
03016 Transfer RNA biogenesis [BR:
vox03016
]
LCH97_07615 (rnr)
Enzymes [BR:
vox01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LCH97_07615 (rnr)
Messenger RNA biogenesis [BR:
vox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LCH97_07615 (rnr)
Transfer RNA biogenesis [BR:
vox03016
]
Prokaryotic type
tRNA degradation factors
LCH97_07615 (rnr)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
HC2
Motif
Other DBs
NCBI-ProteinID:
UDM18520
LinkDB
All DBs
Position
complement(1607536..1610448)
Genome browser
AA seq
970 aa
AA seq
DB search
MASNRKNSKNQPLRLQDPHLSREKTKYDNPLPSREFVLEILEKNGVPMHAEELAAVFPIY
DHELDLFERRLRAMERAGQILINRKGEICVAQKLDLIPCRISGHRDGYGFAVREDGEGDD
IYLSEREMHKVMHGDRVMIRPAGTDRRGRPEGRIADVIERATTRLIARIYNERGVWFAVA
EDRRVRQEMLVEAGGDGGAKHGQVVMVDILEYPDAHRQAIVKVSEVLGDYADPGMEIEIA
LRKHDLPHIFSDEAVAQAVATSQKVGKKDIKDRVDLRDLPLVTIDGETARDFDDAVYAEK
SGKGFRLIVAIADVSHYVRPGDALDVDARTRSTSVYFPRRVIPMLPEELSNGICSLNPDV
DRLCMVCDMQISARGKVKKYQFYPAVMRSQTRFTYTQVWQLLSEGGEHPRKPQLETLYAL
FQQLLAQRKKRGAVDFDTVETQMLFNEQGKIDKIVPVVRNDAHRLIEECMLAANVCSAEF
ILKHEHKCLFRVHEGPTPEKLENLRRFLNVSGLTLGGGDKPTTKDYAELADRVRERSDAS
MIQTMLLRSMQQAVYQPENLGHFGLSYEAYTHFTSPIRRYPDLLVHRTIKAILADKKYKP
GKWEAIGEHCSMAERRADDASRDVQSWLKTYFMRDKVGEVFTGKISAVAGFGIFVLLDGL
YVEGMIHISELGKDYFHFHKDLQAIIGEKSGLRYQLGDAVTIKVMRADLETAQVDFALLD
QGRAKGDGGRDGGRDDRGPRHQKNRRDKRRQGGFEPPQKAPAKPAAEVSVKLVPAVLPVA
SEPAPAAKPSSRNRHRGKGNAANKPAEAAAAKPVVAKPVETKPVAAKQVETKQVEPKQVE
TKQVEPKQVETKPVAAKQVEAKQVETKPEAPVTAKPPRAPRKPAATKAPASKAATAQPAE
PKPAASQPVPPVTAPAAEAAPAKAPRRRKPAASAAANPAPASEAPASPAPAAPAADSATP
KPRSRRSPRR
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggcctccaatagaaaaaacagcaagaaccagcctttgcgcctgcaggacccgcacctg
agtcgcgaaaaaaccaaatacgacaatcccttacctagccgcgaatttgtcctggaaatc
ctcgaaaaaaatggcgtgccgatgcacgcagaggaactggcggccgttttccccatttac
gatcacgagctggacctgttcgagcgccgcctgcgcgccatggaacgtgccggccagatc
ctgattaaccgcaagggcgagatctgcgtggcgcagaagctcgacctgatcccctgccgc
atttccggccaccgtgatggctacggttttgccgtgcgcgaagacggcgagggcgacgat
atctacctttccgaacgcgaaatgcacaaggtgatgcacggtgaccgcgtgatgatccgc
ccggccggcaccgaccgccgtggccgcccggaaggccgtattgccgatgtgatcgaacgt
gccaccacccgcctgattgcgcgtatctacaacgaacgcggtgtctggtttgccgtggcc
gaagaccgccgcgtgcgccaggaaatgctggtggaagccggcggcgacggcggtgccaag
cacggccaggtggtgatggtcgacattctggaatacccggatgcgcatcgtcaggccatc
gtgaaggtcagcgaggtgctgggcgattacgccgaccctggcatggaaatcgaaattgcc
ctgcgcaagcacgacctgccgcatattttcagcgatgaagccgtggcgcaggccgtggct
acctcgcaaaaagtcggcaaaaaagacatcaaggaccgcgtagacctgcgcgacctgccg
ctggtcaccatcgacggcgaaaccgcgcgcgacttcgacgacgccgtatacgccgagaag
agcggcaaaggcttccgcctgatcgtggccattgccgacgtcagccactacgtacgcccc
ggcgacgcgctggacgtggacgcccgcacgcgcagtacttcggtgtacttcccgcgccgc
gtgattcccatgctgccggaagagctgtccaacggcatctgctcgctgaacccggatgtc
gaccgcctgtgcatggtgtgcgacatgcagatctcggcgcgcggcaaggtgaaaaagtac
cagttctacccggcggtgatgcgctcgcaaacgcgctttacctatacccaggtatggcag
ctgctgtccgaaggcggcgagcacccgcgcaagccgcagctcgaaaccctgtacgccctg
ttccagcagctgctggcgcagcgcaagaaacgcggcgcggtggatttcgataccgtcgag
acgcagatgctgttcaacgagcagggcaagatcgacaagatcgtaccggtagtgcgcaac
gacgcccatcgcctgatcgaagaatgcatgctggcggccaacgtgtgctcggccgagttc
attctcaagcacgaacacaagtgcctgttccgcgtgcacgaaggcccgacgcccgagaaa
ctggaaaacctgcgccgcttcctgaatgtcagcggcctgaccctgggcggcggcgacaag
cccaccaccaaagactacgccgagctggccgaccgcgtgcgcgagcgctcggatgccagc
atgatccagaccatgctgctgcgctccatgcagcaggcggtttaccagccggaaaacctg
ggccacttcggcctgtcgtacgaggcgtacacccactttacctcgccgatccgccgctac
cccgacctgctggtgcaccgcaccatcaaggccattctggccgacaagaagtacaagccg
ggcaagtgggaagccatcggcgagcactgctccatggccgagcgccgcgccgatgacgcc
agccgcgacgtgcaatcgtggctgaaaacctacttcatgcgcgacaaggtgggcgaagtg
ttcaccggcaagatcagcgccgtggccggttttggcatcttcgtgctgctggatggcctg
tacgtggaaggcatgatccatatctccgagctgggcaaggactacttccacttccacaaa
gacctgcaagccatcatcggcgagaagagcggcctgcgttaccagctgggcgacgccgtc
accatcaaggtaatgcgcgctgatctggaaaccgcacaggtggactttgccttgctggat
caaggccgcgccaagggcgacggtggccgtgatggcggtcgcgacgaccgtggcccgcgt
caccagaaaaaccgccgcgacaagcgccgtcagggcgggttcgagccgccacagaaggcg
ccggccaagccggcagccgaagtcagcgtcaagctggtaccggctgtattgccagtggcc
agcgagccggcaccggcggccaaaccgtcatcgcgcaatcgtcatcggggcaagggcaat
gcggccaacaagccggcagaagcagctgctgccaaacctgttgttgccaaaccggtagaa
accaagccagttgcagccaagcaggttgaaaccaagcaggtagagcctaagcaggttgaa
accaagcaggtagagcctaagcaggttgaaaccaaaccggtcgcagccaagcaggttgaa
gccaaacaggttgaaaccaagcccgaagcgccggtaacggccaagccaccgcgtgcgccg
cgcaaaccggccgccaccaaagcaccggcgagcaaagcggccacggcgcagcccgcggag
ccgaagccggcagccagccagccggtgccgccagtaaccgcgcccgctgccgaagcggca
cccgccaaagcgccgcgccgtcgcaagccggcggccagtgctgcggccaaccctgcgcca
gccagtgaggcgccggccagcccggcaccggcagcgccggcggccgatagcgcgacaccc
aagccgcgcagccgccgcagcccgcgccgctaa
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