Vogesella sp. XCS3: LCH97_07960
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Entry
LCH97_07960 CDS
T07617
Name
(GenBank) uracil-DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
vox
Vogesella sp. XCS3
Pathway
vox03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LCH97_07960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vox03400
]
LCH97_07960
Enzymes [BR:
vox01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
LCH97_07960
DNA repair and recombination proteins [BR:
vox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LCH97_07960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-ProteinID:
UDM18580
LinkDB
All DBs
Position
1678380..1679078
Genome browser
AA seq
232 aa
AA seq
DB search
MATSAIVAPIAQAPLVAPSPAPAPARIIPIEQPATPREQPISDWATLHTSIASCQRCELA
KTRHNVVVGRGKPTARLLIVGEAPGEQEDRQGQPFVGKAGQLLESMLAAAGIDSEQDVYI
CNVVKCRPPGNRNPAPAEIASCASYLQWQIDAVQPTLIVALGRFAAHTLLNSQAPISALR
KQLHHAHGLPVLVTFHPAYLLRSPGEKAKAWQDWHQIKCQLAASGKVTTSAS
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
ttggccacctcggccattgtcgcgcccattgcacaggcaccgcttgtagctccgtctccg
gcgccggctcctgcacgcatcatcccgatcgagcagcccgccacgccacgcgagcagcca
ataagcgactgggccaccttgcataccagcattgcctcctgccagcgctgcgagctggcc
aagacacggcacaatgttgtcgttggccgcggcaagcccacggcacgcttgctgattgtg
ggtgaggcaccgggcgagcaggaagaccgccaggggcagccgtttgtcggcaaagccggg
cagctgctggaaagcatgttggccgcagccggtatcgacagcgagcaagacgtctatatc
tgcaatgtggtcaaatgccggccaccaggcaaccgcaaccctgctccagcagaaattgcc
agctgcgccagctatctgcagtggcaaatcgacgctgtccagccgacgctgattgtggcg
ctaggccgctttgccgcccacactttgcttaatagccaggcaccgatcagtgcactgcgc
aagcagctgcatcatgcgcatggcctgcccgtactggtaaccttccaccccgcctacctg
ttgcgcagccccggcgaaaaagccaaagcctggcaagattggcaccagataaagtgccag
ctggcagcgtctggcaaggtgacaaccagcgcgtcctga
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