Vogesella sp. XCS3: LCH97_09200
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Entry
LCH97_09200 CDS
T07617
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vox
Vogesella sp. XCS3
Pathway
vox03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vox00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCH97_09200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vox03019
]
LCH97_09200
Enzymes [BR:
vox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LCH97_09200
Messenger RNA biogenesis [BR:
vox03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LCH97_09200
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UDM15503
LinkDB
All DBs
Position
complement(1944959..1946431)
Genome browser
AA seq
490 aa
AA seq
DB search
MSFAELGLAPEILRAIDEMGYSEATPIQAKAIPLVLSGRDLLAAAQTGTGKTAAFLLPIL
ERLKKFANPSVSPAMHPVRALILSPTRELADQIGVNAKAYTKYLPLRTTTVYGGMNMDPQ
VAELRRGIEIVIATPGRLLDHIQQKTIQLNKVDVLVLDEADRMLDMGFIQDIRKIMSLLP
KERQTLLFSATFAPEIKRLAADFMRDPQTVEVARQNSTNAQVEQLVFAVDGFRKRALLSH
LIRQREMSQVIVFCKTKISADQLSRDLKRDGHAAEAIHGDKAQSARLETLERFKSGEVKV
LVATDVAARGLDISELPFVVNYEMPNSPEDYVHRIGRTGRAGASGVAISLMSPDETRQHE
AIEKLTRQTLPPLPLPEGFGGRPPRDEADSAPRRERSERPERSERAERTDRPDAPRRSER
AERGERSPSLYGDKPRRDSRHVPDSRDARDTHDEGEGRKTVKLGIGGRILPQRQREVPAL
LLPPRYKVER
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttgccgagctaggcctggcacctgaaatcctgcgtgccatcgacgaaatgggg
tactcggaagctacccccatccaggccaaggccattccactggtgttgtccggccgtgat
ttgctggcagccgcccaaaccggtacaggcaagactgctgcattcttgctgcctatcctg
gagcgtctgaaaaagtttgccaaccccagcgtttcgccagccatgcacccggtgcgtgcg
ctgattctgtcgcccacacgtgagctggccgaccagattggcgtaaatgccaaggcgtat
accaaatacctgccgctacgtacaaccaccgtgtacggcggcatgaatatggacccgcag
gtcgccgagctgcgccgtggcatcgaaatcgtcatcgccaccccgggccgcctgctggac
cacatccagcaaaaaaccatccagctgaacaaggtagacgtgctggtactggacgaagcc
gaccgtatgctggacatgggctttatccaggacatccgcaagatcatgtcgctgctgccc
aaagagcgccagaccctgctgttctccgctaccttcgcgcccgagatcaaaaggttggcc
gcagacttcatgcgcgacccgcaaacggtggaagtggcccgccagaactcgaccaacgcc
caggtcgagcagctggtgtttgccgtagacggtttccgcaagcgcgccttgctgtcgcac
ctgattcgccagcgcgaaatgagccaagtcattgtgttctgcaagaccaagatttcggcc
gaccagctgtcgcgcgacctgaagcgcgacggccacgccgccgaagccatccacggcgac
aaggcgcagagcgcccgtctggaaacgctggagcgcttcaagagcggcgaagtcaaagta
ctggtagccaccgacgtggcggcccgtggtctggacatttccgagctgccattcgtagtg
aactacgaaatgccgaactcgccggaagactacgttcaccgcattggccgtaccggccgt
gctggtgcctccggtgtggccatctcgctgatgagcccggacgagacgcgccagcacgag
gcgatcgaaaagctgacccgccaaaccttgccgccgctgccgctgcctgagggttttggt
ggccgcccaccgcgtgacgaggccgacagtgcgccgcgtcgcgagcgtagcgaacgcccg
gaacgcagcgagcgtgccgagcgcaccgaccgtccggacgccccgcgccgtagcgaacgc
gccgagcgtggcgagcgtagcccgtcgctgtatggcgataagccccgtcgcgatagccgc
cacgtgccggatagccgtgacgcacgcgatacacacgacgaaggcgaaggccgcaagacg
gtgaagctgggcattggcgggcgtatcctgccgcaacgccagcgcgaagtgcctgcactg
ttgctgccgccgcgttacaaggtagagcgctga
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