Vogesella sp. XCS3: LCH97_12145
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Entry
LCH97_12145 CDS
T07617
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
vox
Vogesella sp. XCS3
Brite
KEGG Orthology (KO) [BR:
vox00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vox03000
]
LCH97_12145
Transcription factors [BR:
vox03000
]
Prokaryotic type
Helix-turn-helix
Other families
LCH97_12145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
GAF
AAA_5
HTH_30
HTH_23
HTH_28
HTH_7
AAA_2
HTH_29
Xre-like-HTH
AAA
HTH_1
MCM
HTH_psq
HTH_20
PAS_8
MAPKK1_Int
RWP-RK
HTH_10
HTH_22
Motif
Other DBs
NCBI-ProteinID:
UDM16042
LinkDB
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Position
2536169..2538058
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AA seq
629 aa
AA seq
DB search
MSTLPLAEIRRRFFDGDELPENSVPQPILHSWRRCLGLGLSAARLRPPERLDNQRLAHRQ
QDNADWLQLARPAIDALFDSVVDEGHVVIVADRDGVILNQMGHPAFLDRAERVALLPGMD
WREDVRGTNAIGTALVTGAAVRVRGSEHYLERNRQLSCTASTIVDPQGQMLGVLDVSGLP
RKLGEAQQLQVVTAVRHIEQRLFDEHTRSLHELRFAPDPATLATPRCARLAFDDDGVLRA
ANRAALSLLGLDWHCLGQTRFAGLSGLSMEHWLSRHGSGVASLRHGGQLYSASLLPPRQA
VAHHGSVLLHSAPPAASPRRPAAGGQHERASDKVGRKQDLALPPGMLDTARRLLEADIPV
LVLGETGAGKERFVQALHAASSRAAAPLVAVNCAAIPEGLIESELFGYEEGAFTGARRQG
AKGRLREADGGILFLDEIGDMPMSLQARLLRVLQERLVVPLGGGPGQKVDVRIVAATHRQ
LEQEVAAGRFRADLYYRLCHYPLTLPPLRERGDVAQIAANLLLQHGSAGRGITLSPALAD
FIRRYPWPGNLRQLDNLLRTLLALADDGTVLTPAHLPASLRGQEDTPRHTANTLHSLLQQ
HGGNASAAARALGISRSTFYRRLREAGPA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccctgcccctggccgaaatccgccgccgtttttttgacggtgacgagctaccg
gaaaacagcgtaccgcagcctatcctgcattcctggcggcgttgcctgggtctgggcttg
tcggccgcacggctgcgcccgcccgagcggctggacaaccagcgcctggcgcaccgccag
caagacaatgccgactggctacagctggccaggccggcgatcgatgcgctattcgacagc
gtggtggacgaaggccatgtggtgattgtggccgaccgcgacggcgtgatcctgaaccag
atgggccacccggcgtttctggaccgcgccgaacgcgtggcgctgctacccggcatggac
tggcgcgaagacgtgcgcggcaccaatgccatcggcaccgcactggtcaccggcgcggcc
gtacgtgtgcgcggcagcgagcactatctggagcgcaaccgccagctatcctgcaccgcc
agtaccatcgtcgacccgcaggggcagatgctgggcgtactggacgtttccggcctgccg
cgcaagctgggcgaggcgcagcagctgcaagtggttaccgcggtacgccatatcgaacaa
cgcctgttcgacgaacatacccgcagcctgcacgagctgcgctttgcccccgacccggcc
acgctggccaccccgcgctgcgcgcggctggcttttgacgacgatggcgtgctgcgtgcg
gccaaccgtgcggcgcttagcctgctggggctggactggcactgcctgggccagacccgc
tttgccggcctatcgggcctgagcatggagcactggcttagccgccacggcagcggcgtg
gcctcgctacgccacggcgggcagctgtactcggccagcctgctgccccccagacaagcg
gtggcccatcacggcagcgtcttgctgcatagcgcgccaccagctgccagcccgcgccgg
cctgccgcaggcgggcaacacgagcgggcaagcgacaaggttggccgcaagcaggacctg
gctttgccaccgggcatgctggacaccgcgcgccgcctgctggaggcggatattccggta
ctggtgctgggtgaaaccggcgccggcaaggagcgctttgtgcaggcactgcacgcggcc
agcagccgcgccgctgcgccgctggtagcggtaaactgcgccgccatcccggaagggctg
atcgagtcggaactgtttggctatgaggaaggcgcgtttacaggcgcccgtcgccagggc
gcgaaagggcgtctgcgcgaggccgacggcggcatactgtttctggatgaaatcggcgac
atgccgatgagcctgcaggccaggctgctgcgcgtactgcaagagcgcctggtggtgccg
ctaggcgggggccccgggcaaaaagtggacgtgcgcattgtggcggccacccaccgccag
ctggaacaggaggtcgccgccgggcgcttccgtgccgacctctactaccggctgtgccac
tacccgctaacgctgccaccgctgcgcgaacgcggcgacgtggcgcagattgcggccaac
ctgctgctgcaacacggcagcgccgggcgcggcattaccctgtcgccggcgctggccgac
tttatccgccgctacccgtggccgggtaacctgcgccagctggataacctgctgcgcacc
ctgctggcgctggccgacgatggcacggtgctgaccccggcacacctgcccgccagcctg
cgcggccaggaagataccccgcgccacactgccaacacactgcacagcctgctacagcag
cacggcggtaatgccagcgccgccgcacgggcactgggtatcagccgcagcacgttttac
cggcggctacgcgaagccgggccggcatga
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