Vogesella sp. XCS3: LCH97_12255
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Entry
LCH97_12255 CDS
T07617
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
vox
Vogesella sp. XCS3
Brite
KEGG Orthology (KO) [BR:
vox00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vox03032
]
LCH97_12255 (gyrB)
03400 DNA repair and recombination proteins [BR:
vox03400
]
LCH97_12255 (gyrB)
Enzymes [BR:
vox01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
LCH97_12255 (gyrB)
DNA replication proteins [BR:
vox03032
]
Prokaryotic type
DNA Topoisomerases
LCH97_12255 (gyrB)
DNA repair and recombination proteins [BR:
vox03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LCH97_12255 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
HATPase_c
Toprim
GyrB_hook
HATPase_c_3
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UDM16063
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All DBs
Position
2558724..2561114
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AA seq
796 aa
AA seq
DB search
MSEQEYGADSIKVLKGLDAVRKRPGMYIGDTQDGTGLHHMVFEVLDNAIDEALAGHADTI
KVTIHPDQSISVEDNGRGIPTDIHPEEGRSAAEVIMTILHAGGKFDSNSYKISGGLHGVG
VSVVNALSDWLKLKIWRNGQVHEMEFRRGEAVAPLTMTGHTTHRGTEVTFRASEETFGHV
EFHFDILAKRIRELSFLNDGVAITLIDKRNGKEENFAFSGGVAGFVQYMNRNKNALHPKV
FYGIGEKEGMTVEVAMQWNDSYQENVQCFTNNIPQRDGGSHLTALRQVMTRTLNGYIEQS
EVAKKAKVDTTGDDMREGLTCVLSVKLPDPKFSSQTKDKLVSSEIGPVVNEVISEALKNF
LMENPNEAKIITGKIVEAARAREAARKAREITRRKGVMDGLGLPGKLADCQEKDPAMSEL
YLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLQSQEVATLITALGCGIGK
DEYNPDKLRYHRIIIMTDADVDGAHIRTLLLTFFYRQTPELVERGHIYIAQPPLYKAKHG
KQERYLKDDFELNQYLLQLALDKAELTPAAGEAPLSGDALGEIARQYLQARAAIDRESRV
VDPLVLHALMKVGRISLDSESAAAAAVQRLAAVLPAELIKLDALRDEKNDAWLIKITRML
HGNVLVTVLDQDFLATADYDVLAKTGDMLHGLLRDGAQVKRGETVKPVSEFGDALDWLLG
ETRKGLSIQRYKGLGEMNPGQLWETTMDPTVRRLLKVKIEDAMAADDVFTTLMGDNVEPR
RAFIESNALIARNIDV
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacaggaatacggcgcggacagcatcaaggtactaaaaggtctggacgcagtg
cgcaagcgccccggcatgtacattggcgacacgcaggacggcaccggcctgcaccacatg
gtgttcgaagtactggacaacgccattgacgaggcgctggccggccacgccgacaccatc
aaagtcaccatccacccggatcaatccatctcggtggaagacaacggccgcggtatccct
accgacatacacccggaagaaggccgctcggcagccgaggtcatcatgaccatcctgcac
gccggcggtaagttcgacagcaacagctacaagatctccggcggcctgcacggcgtgggc
gtatcggtagtgaacgcgctgtccgactggctcaagctcaaaatctggcgtaacggccag
gtgcacgaaatggaattccgccgtggcgaagccgtggccccgctgaccatgaccgggcac
accacccaccgtggtaccgaggtcaccttccgcgccagcgaagaaaccttcggccacgta
gagttccacttcgacattctggccaagcgcatccgcgagctgtcgttcctgaacgacggc
gtggccattaccctgatcgacaagcgcaacggcaaagaagaaaactttgcctttagcggc
ggcgtagccggcttcgtgcaatacatgaaccgcaacaaaaacgccctgcaccccaaggtg
ttctacggcattggcgaaaaagaaggcatgaccgtagaagtagccatgcagtggaacgac
agctaccaggaaaacgtgcagtgcttcaccaacaacatcccgcagcgcgacggtggtagc
caccttaccgccctgcgccaggtgatgacccgcaccctgaacggctacatcgaacaaagc
gaagtggccaaaaaagccaaggtagacaccaccggcgacgacatgcgcgaaggcctgacc
tgcgtgctgtccgtaaaactgcccgaccccaaattcagcagccagaccaaagacaaactg
gtctccagcgaaatcggccccgtggtaaacgaagtcatcagcgaagccctgaaaaacttc
ctgatggaaaaccccaacgaagccaaaatcattaccggcaagattgtggaagccgcccgc
gcccgcgaagccgcccgcaaagcccgcgaaatcacccgccgcaaaggcgtgatggacggc
ctgggcctgcccggcaagctggccgactgccaggaaaaagacccggccatgtccgaactt
tacctggtcgagggtgactccgccggcggctccgccaagcaaggccgcgaccgcaagttc
caggccatcctgccgctaaaaggcaagatcctgaacgtggaacgcgcccgcttcgacaaa
atgctgcaaagccaggaagtagccacgctgattaccgccctgggctgcggcattggcaaa
gacgaatacaacccggacaagctgcgctaccaccgcatcatcatcatgaccgatgccgac
gtggacggcgcgcacatccgcaccctgctgctgaccttcttctaccgccagacccccgag
ctggtagagcgtggccacatctacatcgcccagccgccgctgtacaaagccaagcacggc
aagcaggaacgctacctgaaagacgatttcgagctgaaccagtacctgctgcagctggcg
ctggacaaagccgagctcacccccgccgccggcgaagccccgcttagcggcgacgccctg
ggtgaaatcgcccgccagtacctgcaagcccgcgccgccatcgaccgcgaaagccgcgta
gtagacccgctggtactgcacgccctgatgaaggttggccgcatcagcctggatagcgaa
agcgccgccgccgccgccgtacagcgcctggccgccgtactgccagccgagctcatcaag
ctggacgccctgcgcgacgagaaaaacgacgcctggctcatcaagatcacccgcatgctg
cacggcaacgtgctggttaccgtgctggaccaggactttttggccaccgccgactacgac
gtactggccaaaaccggcgacatgctgcacggcctgctgcgcgacggcgcccaggtaaaa
cgcggcgaaacggtaaaaccggtaagcgaatttggcgacgcgctagactggctgctgggc
gaaacccgcaagggcctgtccatccagcgctacaaaggcctgggcgaaatgaaccccggc
cagctgtgggaaaccaccatggacccgacagtacgccgcctgctgaaagtaaaaatcgaa
gacgccatggccgccgacgacgtgtttaccaccctgatgggcgacaacgtcgaaccacgc
cgcgcgtttatcgagagcaatgcgttgattgcgcggaatattgatgtttga
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