Vogesella sp. XCS3: LCH97_14705
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Entry
LCH97_14705 CDS
T07617
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vox
Vogesella sp. XCS3
Pathway
vox03030
DNA replication
vox03410
Base excision repair
vox03420
Nucleotide excision repair
vox03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LCH97_14705 (polA)
03410 Base excision repair
LCH97_14705 (polA)
03420 Nucleotide excision repair
LCH97_14705 (polA)
03440 Homologous recombination
LCH97_14705 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vox03032
]
LCH97_14705 (polA)
03400 DNA repair and recombination proteins [BR:
vox03400
]
LCH97_14705 (polA)
Enzymes [BR:
vox01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LCH97_14705 (polA)
DNA replication proteins [BR:
vox03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LCH97_14705 (polA)
DNA repair and recombination proteins [BR:
vox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LCH97_14705 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCH97_14705 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
UDM16527
LinkDB
All DBs
Position
3087420..3090224
Genome browser
AA seq
934 aa
AA seq
DB search
MKTLLLIDGSSYLYRAFHAMPDLRSPQGEPTGAIYGMVNMLARLEKEVQFDYSACIFDAK
GKTFRDALYPEYKANRPSMPAELAAQIETVHEVVRASGWPLLMVEGVEADDVIGTLARQA
EAAGLKVIISTGDKDMAQLVTPAVSLVNTMTNENLDEAGVKEKFGVPPNLIIDYLTLIGD
KVDNVPGVDKCGPKTAVKWLEQYGSLAAVMDNAANVGGKVGENLRAVLDWLPRGRELITI
KCDVELYHELPQGMDSLRHGSKQYAQLAVLFAQCGFRTFLREVNDKLGGVVAANPAPAQA
PLHVSGSLFGDDLDTVSALAAGIEPQLAPPPAVERRYETILTQAQLDAWLHKLATAGVVS
VDTETTSLDPMQARIVGLSFAVQAGEAAYLPLAHCGPDAPEQLDFDAVLAQLKPWLEDAS
RPKLGQNLKYDRHVLANHGITLRGVVDDTLLGSYVIESHERHGMDDLARRHLGETTVTYE
EICGKGAKQIGFAEVAVDVAANYAAEDADITLRLAQHFAPQLDGALGSVYRDMELPVAEV
LFAMERTGVLIDRDKLAAQSHQLGSEMLQLEQQAYALAGQPFNLNSPKQLQEILFGKLGI
PTKGVRKTPSGGFSTDEEVLEKLALDHPLPKLILQYRGLAKLKSTYTDKLPTLINPQTGR
VHTTYSQAVAITGRLASSEPNLQNIPVRTAEGRRVREAFIAEPGFVIVSADYSQIELRIM
AHLSADEGMLAAFASGEDIHKATAAEVFGTPLAEVNTEQRRAAKAINFGLIYGMGKYGLA
SQLGITNDAAQVYIDSYFRKYPGVADYMQRTREQAAEQGYVETVFGRRLYLPDIRAGNQA
RRAGAERAAINAPMQGTAADLIKLAMIAVQGWLLRDGLRSRLIMQVHDELVLEVAHDELD
LVRTRLPQLMADVAALKVPLLAEVGVGDSWEAAH
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaccctgttattgatcgatggctcttcttatttgtatcgcgcctttcacgcgatg
cccgacttgcgttcgccgcagggggagcccaccggtgccatctacggcatggtgaacatg
ctggcccgtttggaaaaggaagtccaattcgattatagcgcctgcatattcgacgccaag
ggcaagactttccgcgacgcgctgtaccccgaatacaaagccaaccgcccgtctatgccg
gcggagctggccgcgcagatcgagaccgtgcacgaggtggtgcgcgccagcggctggccg
ctgttgatggtggaaggcgtggaggcggacgatgtgatcggcacgctggcccgccaggcc
gaggcggccggcttgaaggtgatcatctccaccggcgacaaggacatggcgcagctggtg
acgcccgccgtcagcctggtgaacaccatgaccaacgaaaatctggacgaagccggtgta
aaagaaaaattcggcgtgccgccgaacctgatcatcgactacctgacgctgattggcgac
aaggtggacaacgtaccgggcgtggataaatgcggcccgaaaacagcagtgaaatggctg
gagcagtacggctcgctggccgcggtgatggacaatgcggccaacgtgggcggcaaggtg
ggcgaaaacctgcgcgcggtgctggattggctgccgcgcgggcgcgagctgatcaccatc
aagtgcgacgtggagctgtaccacgagctgccgcagggcatggacagcctgcgccacggc
agcaagcagtacgcgcagctggcagtactgtttgcccaatgcggcttccgcaccttcctg
cgcgaagtgaacgacaagctgggtggggtggtggcggccaacccggcgccggcgcaagcg
ccgctacacgtcagcggcagcctgtttggcgacgacctggacaccgtgtctgcgctggcc
gccggcatcgaaccgcaactggcgccgccgccggcggtggaacgccgctacgagaccatt
ctcacgcaagcccagctggacgcctggctgcacaagctggccacggccggggtggtgtcg
gtggataccgaaaccaccagcctggacccaatgcaggcgcgcattgtcggcctcagcttt
gcggtacaggccggcgaggccgcgtatttgccgctggcgcattgcggcccggacgcgccc
gaacagctggatttcgacgcagtgctggcacaactgaagccgtggctggaagacgccagc
cggcccaagctggggcagaacctgaagtacgaccgccacgtgctggccaaccacggcatc
acgctgcgcggtgtggtggacgacacgctgctggggtcttatgtgatcgaaagccacgaa
cgccacggcatggacgacctggcgcgccgccacctgggcgaaaccaccgtcacctacgag
gaaatctgcggcaagggcgccaagcagatcggctttgccgaagtggcggtggacgttgcg
gccaactacgccgcagaagacgccgacattaccttgcgcctggcgcagcactttgcaccg
cagctcgatggtgcgctgggtagcgtataccgcgatatggagctgccggtggccgaggtg
ctgtttgccatggagcgcaccggcgtgctgatcgaccgcgacaagttggccgcacaaagc
caccagctgggtagtgagatgctgcagctggagcagcaggcttatgcgctggccggccag
ccgttcaacctgaattcgcccaagcagctgcaggaaatcctgttcggcaagctgggtatc
cccaccaagggtgtgcgcaaaacgccgtcgggcggtttctctaccgacgaggaagtgctg
gaaaaactggcgctggaccacccgctgcccaagctgatcctgcagtaccgcggcctggcc
aagctcaagtccacttacaccgacaagctgccgaccctgattaatccacagaccggccgc
gtgcacaccacttattcacaggcggtggccattaccggccgcctggccagtagcgagccc
aatctgcagaacatcccggtgcgtaccgccgaaggccgccgcgtgcgcgaggccttcatc
gccgagccggggttcgtgattgtcagcgccgactactcgcagatcgagctgcgcatcatg
gcgcacctgtctgccgacgaaggcatgctggcggcttttgccagcggcgaggacatccac
aaggccaccgccgccgaggtattcggcaccccgttggcggaggtcaacaccgagcaacgc
cgcgccgccaaggccatcaacttcggcctgatctacggcatgggcaaatacggcctggcc
tcgcagctgggcatcaccaacgacgcggcgcaggtctacatcgacagctatttccgcaag
taccctggtgtggccgactacatgcagcgcacccgcgagcaggccgccgagcagggctac
gtggaaaccgtgttcggccgccgcctgtacctgccggacatccgcgccggcaaccaggcg
cgtcgtgccggtgccgagcgcgccgccatcaacgcgccgatgcagggcacggccgccgac
ctgatcaagctggcgatgatcgcggtacagggctggctgttgcgggacggcctgcgtagc
cgcctgatcatgcaggtacacgatgaactggtgctggaggtggcgcacgacgagctggac
ctggtgcgtacccgcctgccgcagctgatggccgacgtggcggcgctgaaggtgccgctg
ctggccgaagtgggcgtgggcgatagctgggaagcagcgcactaa
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