Vibrio parahaemolyticus RIMD 2210633: VP0189
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Entry
VP0189 CDS
T00120
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
VP0189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpa03400
]
VP0189
Enzymes [BR:
vpa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
VP0189
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
VP0189
DNA repair and recombination proteins [BR:
vpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
VP0189
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
Zn_ribbon_IS1595
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BAC58452
UniProt:
Q87T81
LinkDB
All DBs
Position
1:200912..201721
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AA seq
269 aa
AA seq
DB search
MPELPEVEVSRMGISPHMVGQTIKAFVFRTPKLRWDIPQELKLLEGQVIRNIRRRAKYLL
IDTDQGTAIVHLGMSGSLRVLDADFPAAKHDHVDLKLTNGKVLRYNDPRRFGAWLWCAPG
ESHAVLEHMGPEPLTDAFNSEYIADKAQGKRVAVKQFIMDNKVVVGVGNIYANESLFKSR
ILPTRQAGQVTPQEWVLLVENIKATLKIAINQGGTTLKDFAQADGKPGYFAQELLVYGKA
GEPCPECGEPLQELKIGQRNTFFCNECQQ
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaagttgaagtaagccggatgggtattagtccacatatggttgga
caaacgattaaggcatttgtttttcgcacacccaaactgcgctgggatatcccgcaagag
cttaagcttttggaagggcaggttattcgtaatattcgtcgtcgcgccaagtacttattg
attgatactgaccaaggtacagcgattgttcaccttggcatgtctggatcattgcgcgta
ctcgacgctgacttccctgcggcaaagcacgatcatgttgaccttaaactcaccaatggc
aaagtgttacgctacaacgaccctcgacgctttggtgcttggctatggtgcgctcctggt
gagtcccatgcggtacttgagcatatgggaccagagcctctaactgatgcgtttaatagc
gagtacattgccgataaagcgcaaggcaagcgtgtcgcggtaaagcagttcatcatggac
aacaaagtcgtggtcggtgtggggaatatttacgccaatgaatctctgtttaaatctcgt
attctcccaacccgacaagcaggtcaagtgacgccccaagaatgggtactgttagtggaa
aacatcaaagccacgctaaaaattgccattaaccaaggtggtacgactttaaaagacttc
gctcaagccgatggcaagccgggttattttgctcaagaacttctagtgtatggaaaagcg
ggtgaaccttgcccagaatgtggagagccgcttcaagagctaaaaattggccaacgtaat
accttcttctgtaatgagtgccagcaatag
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