Vibrio parahaemolyticus RIMD 2210633: VP0505
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Entry
VP0505 CDS
T00120
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpa03009
]
VP0505
Enzymes [BR:
vpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VP0505
Ribosome biogenesis [BR:
vpa03009
]
Prokaryotic type
rRNA helicases
VP0505
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
AAA_11
AAA_30
AAA_22
AtuA_ferredoxin
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
BAC58768
UniProt:
Q87SB9
LinkDB
All DBs
Position
1:complement(520166..521389)
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AA seq
407 aa
AA seq
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MIRTFAELDLDQNLLEAIEEMGYERPTKIQAEAIPQALDGRDILASAPTGTGKTAAFVLP
ALQYLQDFPRRKPGPARILILTPTRELAMQVADQARALAKNTKLNIFTITGGVQYQEHAD
ILATTQDIVVATPGRLREYIDAERFDCRAIEWLVLDEADRMLDMGFAPTVDRLSNECRWR
KQTLLFSATLEGKGVEGFTADLLNEPAEIDAKSPLRERKKIAQWYHRADSAEHKLALLKH
IITEQAERTIVFLKTRERLAELRAQLESAQIPCSWIQGEMPQDRRNNAIARFRDGTVNVL
LATDVAARGIDLPDVSHVINYDMPRTADVYLHRIGRTARAGKKGNAISIVEAHDQPMMDR
VARYVKEDIKERFIKEMRPKHKKPVFKKKKKKEDKKKTAKKKTAKKK
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
gtgatcagaacctttgctgaacttgatctagaccaaaacctacttgaagccattgaagag
atgggctacgaacgcccaactaaaattcaggcagaagcgattccacaagcgttggatggt
cgtgacattctagcgtcagcgccaacgggtactggtaaaacggcagccttcgttctgcca
gcattgcaatacttgcaagatttccctcgtcgtaaacctgggcctgcgcgtattttgatc
cttacgccaactcgcgaactagcgatgcaggttgccgaccaagctcgtgctttggcaaag
aacactaagctgaacatcttcacaatcacaggcggcgttcaataccaagaacacgcagac
atcctagcaactacgcaagacatcgtagttgcaacaccaggccgtctacgtgagtacatt
gatgcagaacgttttgattgtcgtgctatcgaatggctggttctcgatgaagcagaccgc
atgctggacatgggctttgctccaacggttgaccgtctgtcgaatgaatgtcgctggcgt
aagcaaacccttctgttttcagcaacattagaaggtaaaggcgtagaaggcttcacagct
gacctactgaacgagccagcagagatcgacgcaaaatcgccactgcgtgagcgtaagaag
attgctcaatggtatcaccgtgctgatagcgcagaacacaaactggctctgctgaaacac
atcatcacagagcaagctgaacgcactatcgtgttcttaaaaactcgtgaacgcttggca
gagctgcgtgcacaacttgagagcgcacaaatcccgtgttcgtggattcaaggcgaaatg
cctcaagatcgtcgtaataatgccattgcacgtttccgtgacggcacggtgaacgtgcta
ctagcaactgacgttgcggcgcgtggtatcgaccttcctgatgtttctcacgttatcaac
tacgacatgccgcgcacggctgacgtataccttcaccgtatcggccgtacagctcgtgca
ggtaagaaaggtaacgcaatctcaatcgtagaagcgcacgaccagccaatgatggatcgc
gtagcacgttacgtgaaagaagacatcaaagagcgtttcattaaagagatgcgccctaag
cacaagaaacctgtgtttaagaagaaaaagaaaaaagaagacaagaagaaaacagcgaaa
aagaaaaccgctaagaagaagtaa
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