Vibrio parahaemolyticus RIMD 2210633: VP0688
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Entry
VP0688 CDS
T00120
Name
(GenBank) exodeoxyribonuclease, small subunit
KO
K03602
exodeoxyribonuclease VII small subunit [EC:
3.1.11.6
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
VP0688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpa03400
]
VP0688
Enzymes [BR:
vpa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
VP0688
DNA repair and recombination proteins [BR:
vpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
VP0688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_S
COMM_domain
Vps53_N
LRIM1_dimer
Motif
Other DBs
NCBI-ProteinID:
BAC58951
UniProt:
Q87RT8
LinkDB
All DBs
Position
1:complement(720852..721094)
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AA seq
80 aa
AA seq
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MAVKKPENMTFEATIEELDSLVDQLENGDLALDDALRKFERGIALARAGQTKLSDAEQRV
SILLSEDDEAPLNDFKPDSE
NT seq
243 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcaagaaaccagaaaacatgaccttcgaagcaaccattgaagagcttgatagc
ttggttgatcaattagaaaacggcgatcttgccctagatgatgccttacgtaaatttgaa
cgaggcattgccttagctcgtgctggccaaaccaaactgagcgacgcagaacagcgcgta
agcattcttcttagcgaagatgacgaagcccctcttaacgacttcaaaccagattcagaa
taa
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