Vibrio parahaemolyticus RIMD 2210633: VP0715
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Entry
VP0715 CDS
T00120
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa00260
Glycine, serine and threonine metabolism
vpa00460
Cyanoamino acid metabolism
vpa00630
Glyoxylate and dicarboxylate metabolism
vpa00670
One carbon pool by folate
vpa00680
Methane metabolism
vpa01100
Metabolic pathways
vpa01110
Biosynthesis of secondary metabolites
vpa01120
Microbial metabolism in diverse environments
vpa01200
Carbon metabolism
vpa01230
Biosynthesis of amino acids
vpa01240
Biosynthesis of cofactors
vpa04981
Folate transport and metabolism
Module
vpa_M00140
C1-unit interconversion, prokaryotes
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
VP0715
09102 Energy metabolism
00680 Methane metabolism
VP0715
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
VP0715
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
VP0715
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
VP0715
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
VP0715
Enzymes [BR:
vpa01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
VP0715
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Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
OKR_DC_1
DegT_DnrJ_EryC1
Aminotran_5
Motif
Other DBs
NCBI-ProteinID:
BAC58978
UniProt:
Q87RR2
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All DBs
Position
1:749967..751217
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AA seq
416 aa
AA seq
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MLKRDMNIADYDAELFAAIQEETLRQEEHIELIASENYTSPRVMEAQGSQLTNKYAEGYP
GKRYYGGCEYVDKAEQLAIDRACKLFGCEYANVQPHSGSQANSAVYMALLNPGDTVLGMS
LAHGGHLTHGSPVNFSGKHYNVIPYGIDEAGQINYDEMEQLALEHKPKMIIGGFSAYSQI
VDWKRMREIADKVDAYLFVDMAHVAGLIAAGEYPTPVPHAHVVTTTTHKTLAGPRGGLIL
SNAGEDMYKKLNSAVFPGGQGGPLMHVIAGKAVAFKEAMEPEFKAYQARVVKNAKAMVGQ
FQERGYKIVSNGTENHLFLVDLIDKDITGKDADAALGAANITVNKNSVPNDPRSPFVTSG
IRVGTPAITRRGFTEEDAKDLANWMCDVLDNIGNEEVIEATKQKVLEICKRLPVYA
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgcttaagcgtgatatgaacatcgcagattacgatgcggaactgttcgcagctatccag
gaagaaacccttcgccaggaagaacacattgaacttatcgcttctgaaaactacacaagc
ccacgtgtaatggaagcgcaaggttctcagctaacgaacaaatacgctgaaggctaccca
ggcaagcgttactacggcggttgtgagtacgtagataaagcagaacagcttgctatcgat
cgtgcatgcaaactattcggttgtgagtacgcgaacgtacaacctcactcaggttctcaa
gcaaacagcgcagtttacatggcgcttcttaacccaggagatacagtactaggtatgagc
ctagcgcacggtggtcacctgactcacggttctccagtaaacttctctggtaagcattac
aacgttatcccttacggtatcgatgaagcgggtcaaatcaattacgacgagatggaacag
ctagcgcttgagcacaagcctaagatgatcatcggtggtttttctgcttactcgcaaatc
gttgattggaagcgcatgcgtgaaatcgcggacaaagtagatgcttaccttttcgttgat
atggcacacgtagctggtcttatcgcagcaggcgaatacccaacacctgttccacacgct
cacgtagtaacaacaacgacgcacaaaacactagcaggccctcgcggtggtcttatcttg
tctaatgctggcgaagatatgtacaagaagctgaactcagctgtgttccctggtggtcaa
ggtggccctctaatgcacgttatcgctggtaaagcagtagcgttcaaagaagcgatggag
ccagagttcaaagcttaccaagctcgcgtagtgaaaaacgcaaaagcaatggttggtcag
ttccaagagcgtggctacaaaatcgtatctaacggcacagaaaaccacttgttccttgtg
gatctaatcgacaaagacatcactggtaaagatgcagacgcggcactaggtgcagcaaac
atcacagtaaacaagaactcagtaccaaatgacccacgcagcccattcgtaacgtctggt
attcgtgtaggtacaccagcgatcactcgtcgtggctttactgaagaagacgcaaaagat
ctagcaaactggatgtgtgacgttctagataacatcggcaacgaagaagttatcgaagcg
actaaacagaaagtattagaaatctgtaagcgtctaccggtttacgcctaa
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