Vibrio parahaemolyticus RIMD 2210633: VP2208
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Entry
VP2208 CDS
T00120
Name
(GenBank) fatty oxidation complex, alpha subunit
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa00071
Fatty acid degradation
vpa00280
Valine, leucine and isoleucine degradation
vpa00310
Lysine degradation
vpa00362
Benzoate degradation
vpa00380
Tryptophan metabolism
vpa00410
beta-Alanine metabolism
vpa00640
Propanoate metabolism
vpa00650
Butanoate metabolism
vpa00907
Pinene, camphor and geraniol degradation
vpa00930
Caprolactam degradation
vpa01100
Metabolic pathways
vpa01110
Biosynthesis of secondary metabolites
vpa01120
Microbial metabolism in diverse environments
vpa01200
Carbon metabolism
vpa01212
Fatty acid metabolism
Module
vpa_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
VP2208
00650 Butanoate metabolism
VP2208
09103 Lipid metabolism
00071 Fatty acid degradation
VP2208
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
VP2208
00310 Lysine degradation
VP2208
00380 Tryptophan metabolism
VP2208
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
VP2208
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
VP2208
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
VP2208
00930 Caprolactam degradation
VP2208
Enzymes [BR:
vpa01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
VP2208
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
VP2208
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
VP2208
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
LEM
Motif
Other DBs
NCBI-ProteinID:
BAC60471
UniProt:
Q87MM3
LinkDB
All DBs
Position
1:complement(2320500..2322611)
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AA seq
703 aa
AA seq
DB search
MSEQKAFSLNVDEQNIAWLAIDVPNEKMNTLQAAFADEMKEIFAQLKDSSGIKGMIIHSL
KPDNFVAGADVRMLEACTTANEAQALAKQGQELFQQLSDLPYPVVAAIHGPCLGGGLELA
LACDYRVCTDFDKTRLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDLILTGKQLRAKKAK
KLGVVDACVPDTILLDVAKQFIDKGKNKGKKKQSTKEKLMSGSGLGRKLVFEQAAKKTNQ
KTRGNYPATVAILEVIQHGLEKGFAQGQELEAKRFGELVMSSESKALRSIFFATTEMKKE
HGTDAQPAAVKKVGVLGGGLMGAGISHVTVAKAKVPVRIKDVSNDGVLNALNYNYKLFEK
QRKRRILSKADLQAKMLQLSGGVDFTSYNHIDVVIEAVFEDLDLKQQMVADIEANAKSET
IFATNTSSLPIHKIAEKAERPENIVGLHYFSPVEKMPLVEVIPHETTSDETISTVVALAK
KQGKTPIVVKDKAGFYVNRILAPYMNEAAHILLANEPIEKLDGALLDFGFPVGPITLLDE
VGVDIGAKIMPILVNELGERFKGPDVFDILLNDGRKGRKSGKGFYTYKGKKKEVDKSIYK
LLKLTPESKLSDNDIALRCVLPMLNEAVRCLDDGIIRSPRDGDIGAIFGIGFPPFLGGPF
RYMDQFGLKELVEKMNEFASKYGDRYAPCDGLLTRAGEGRTFY
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcaaaaagcatttagtcttaacgttgatgagcagaacattgcatggttagcg
atcgacgtaccgaatgaaaagatgaacacgctacaggcagcttttgctgatgaaatgaaa
gaaatttttgctcagctaaaagactccagtggcatcaaagggatgatcattcactcctta
aaaccggataattttgtggcaggtgccgatgttcgtatgttggaggcatgtaccacagcg
aatgaagcacaagcattggcaaaacaaggtcaagagttgttccaacaactgtctgactta
ccttaccctgtagttgcggctattcatggcccatgtttggggggcggtttagagcttgcg
cttgcatgtgattaccgtgtttgtacggatttcgataagacacgcttaggcttaccagaa
gttcaactcggtctattaccgggctctggcggtactcagcgtttgccacgtttgattggt
ctgttaccgtcattggacttgatcctgacgggtaaacagcttcgcgcgaagaaagccaaa
aaactgggcgttgtggacgcgtgtgtccctgacaccattttgctcgacgtcgcaaaacag
tttatcgacaaaggcaagaacaagggcaagaaaaagcaatcgacgaaagagaagttgatg
tcgggcagtgggttaggtcgtaagcttgttttcgaacaagctgcgaagaaaaccaaccag
aagacccgtggcaactatccagcaacggtcgcgattcttgaagtgattcaacacggtctg
gaaaaaggctttgcacaagggcaagagcttgaagcgaaacgatttggtgagcttgtgatg
agctccgaatcgaaagcattgcgctctatctttttcgcgactactgaaatgaagaaggaa
cacggcacggatgcacagccagcagcggtgaaaaaagtgggtgttcttggtggcggctta
atgggcgccgggatcagtcatgtaacggtagctaaagcaaaagtgcctgttcgaatcaaa
gatgtgagcaatgacggtgtgttgaatgcgcttaactacaactacaagttgtttgagaag
cagcgtaaacgtcgcatcctgtcgaaagccgatttacaggcgaagatgttgcaactgtct
ggtggcgtagactttacaagttacaaccacattgatgttgtgatcgaagcggttttcgaa
gacttggatctaaaacaacagatggttgcggacattgaagcaaacgcaaaatctgaaact
atttttgctacgaacacgtcttcgttaccaatccacaagattgcagaaaaggcagagcga
ccagaaaacatcgtcggtttacattactttagcccagtagaaaaaatgccgctggtggaa
gtgattccgcatgaaacaacgtctgatgaaaccatttcgacagttgtcgcattggctaag
aagcagggtaaaaccccaatcgttgtgaaggacaaagctggcttttacgtaaaccgcatt
cttgcgccttacatgaatgaagctgcgcatatcttgctggcaaatgagccgattgagaag
ttagatggtgcgttgttggatttcggcttccctgttgggccaatcacgttacttgatgaa
gttggtgttgatattggcgcgaagatcatgccgattctagtcaatgagttgggcgagcga
ttcaaaggtcctgatgtattcgatatcttattgaatgacggtcgcaaaggacgcaagagc
gggaaaggtttctacacttacaaaggtaagaagaaagaagtcgataaatccatctacaag
ctactcaaactgacgccagaatcgaagctcagcgataacgatattgcgttgcgctgtgta
ctgccaatgcttaatgaagcagtacgatgcttggacgacggtattattcgctctccgcgc
gatggcgatattggtgcgatttttggtattggcttccctccattccttggcgggccattc
cgttatatggatcaattcggtttgaaagaactggttgagaaaatgaacgaatttgcatcg
aaatatggcgatcgttatgcgccatgcgacggactgctgactagagcgggtgaaggtcgt
accttctactaa
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