Vibrio parahaemolyticus RIMD 2210633: VP2303
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Entry
VP2303 CDS
T00120
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa03030
DNA replication
vpa03430
Mismatch repair
vpa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VP2303
03430 Mismatch repair
VP2303
03440 Homologous recombination
VP2303
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpa03032
]
VP2303
03400 DNA repair and recombination proteins [BR:
vpa03400
]
VP2303
Enzymes [BR:
vpa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
VP2303
DNA replication proteins [BR:
vpa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
VP2303
DNA repair and recombination proteins [BR:
vpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
VP2303
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
BAC60566
UniProt:
Q87MF2
LinkDB
All DBs
Position
1:complement(2412463..2415942)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFVHLRIHSDFSMVDGINKVPPIVKKVAELGMPAMALTDFTNLCGLVKFYGTAHGS
GVKPIIGADFKMQSDEFGEELTQLTVLAADNAGYKNLTLLISKAYLRGHVQHQPVIDRAW
LAEMSEGLIVLSGAKNGDIGKALLKGNRKLVESCVEFYKQHFQDRFYLELIRTGRPDEET
YLHFAIDLAEQHDLPVVATNEVVFLSADLFDAHEIRVAIHDGYTLEDPRRPKNYSPQQYL
RTEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGMEETEFLVMKSREGL
EERLEFLFPNEEERKKRRPEYDERLQIELDVINQMGFPGYFLIVMEFIQWSKDNAIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFKAEPA
LPELYEADEEVKELIDMCRLLEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKPPVRIESIPLEDPASFRLL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRATFEEGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHYPA
EFMAAVMTADMDNTEKVVGLVDECFRMKLTVLPPDINSGLYRFNVDENGAIVYGIGAIKG
VGEGPIDAILEARNKGGHFKDLFDFCARIDLKRVNKRVIEKLIYAGALDRLGPHRAAMMA
SLNDAVKAASQHHQAEAFGQGDMFGVLTDAPEEVENKYTQVPPWPEKVWLEGERETLGLY
LTGHPINAYLKELNKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGIMTLDD
RSGRMEVMLFSDALDRYAELLEKDRILVVSGQVSFDDFNGGLKMSAREVMDLGSAREKYA
RGLSVSIDANQINDQFFEQFSRILEPHKAGTVPVNVYYQRADARARLTLGTEWRVTPSDT
LIDDLKQLLGKSQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcccaagttcgtccaccttcgtattcacagtgatttctcgatggtggatggt
atcaataaagttccaccgatagtcaagaaagtcgccgagcttggtatgcctgccatggct
ttgactgacttcaccaacttatgtggtttggtgaagttttatggcacagcgcatggctcc
ggcgttaaaccgatcatcggtgcagatttcaaaatgcaatctgatgaatttggtgaagaa
ctgacccagctgacagtacttgctgccgacaatgcaggttacaagaacctcacgttactg
atttccaaagcgtacttacgtggccacgttcagcaccaacctgtgattgatagggcgtgg
ctggccgagatgtcagaaggcttaatcgttctatctggtgctaaaaatggcgatatcggc
aaagcgctgcttaaaggtaaccgtaaactggttgaaagctgtgtagagttttacaaacag
catttccaggaccgtttctatctagaattgattcgtacaggccgtccggatgaagagacg
tacttgcattttgccatcgatctcgctgagcaacatgacttgcccgtggtcgcgacaaac
gaagtggttttcctaagtgcagaccttttcgatgcgcacgagattcgtgttgcgattcat
gatggttacacattagaagatccacgccgaccaaaaaattacagcccgcagcagtacctt
cgcactgaagaggaaatgtgtgagctgtttgctgatattccagaagcgctagaaaacagt
gtcgagatcgctaagcgttgtaacgtgaccgttcgtttgggtgaatacttcttgccagcc
ttcccaacagaagggatggaagaaactgaattcttggtcatgaagtcgcgagaaggtttg
gaagagcgtctagagttcctattccctaatgaagaagaacgcaaaaagcgccgtccagaa
tacgacgagcgtttacaaatcgaactcgacgtaatcaaccaaatggggttcccaggctac
ttcttgatcgtaatggagttcatccagtggtcgaaagacaacgcgattccagtcggtcct
ggtcgtggttcgggtgccggttctttggtggcctacgcgctgaaaatcaccgatcttgat
ccgcttgaatatgacttgctcttcgaacgtttcttgaacccagaacgtgtatccatgccc
gatttcgacgtcgacttttgtatggataagcgtgaccaagtgattgatcacgttgccgaa
atgtacggtcgcgatgccgtatctcagatcatcacattcggtacgatggcggcgaaagcg
gtaatccgtgacgttggtcgtgttcttggtcacccatttggtttcgttgaccgtatttcg
aaactggttccgccagatccgggtatgacgctagaaaaagcgtttaaagccgagcctgct
ctgcctgagctttatgaggccgatgaggaagttaaagaactcatcgatatgtgtcgccta
ttagaaggttgtacacgtaacgccggtaagcacgcgggtggtgttgtaatttcaccaacc
acgattacagactttgcgccaatttatgcggatgcggaagggcatttccccgtaactcag
tttgataagaacgacgtagaaactgctggtctggttaagtttgacttcttgggcctacgt
actctaaccattatcgactgggcattagggttgattaacccgcgcttggagaaggaaggt
aaacctcctgttcgtatcgagtcgatacctttggaagatccggcttcgtttcgtttactc
caaaactcagagaccactgcggtattccagcttgaatcgcgtggtatgaaagagctgatc
aaacgacttcagcctgactgttttgaagacatcatcgcattggtggccttgttccgtccg
ggtccgttgcaatcgggcatggtagataactttatcgaccgtaaacatggccgagaagcg
atctcttaccccgatgaaaagtggcaacacgagtcactaaaagaaatcctcgatccgacg
tacggcatcattctgtatcaagaacaggtaatgcagattgcgcaggttttgtctggctac
acccttggtggtgcggacatgctgcgtcgtgcgatgggtaagaaaaagccggaagaaatg
gccaagcagcgtgcaaccttcgaagaaggggcagtgaagaacggtgttgatggcgagttg
gcgatgaaaatcttcgacttggtagaaaagttcgcaggttacggttttaacaaatcgcac
tcagcggcttacgcactggtgtcttaccaaacgttgtggcttaaaacgcactatccagct
gaattcatggcggcggtaatgactgccgatatggataacaccgaaaaagtagttggtctg
gtggacgaatgcttccgcatgaaactcaccgtgttgccgccagacatcaactccggttta
taccgtttcaacgttgatgaaaacggtgcgattgtttacggtatcggcgcaatcaaaggt
gtgggtgaaggccctatcgatgcgatactagaagcgcgaaacaaaggtggtcactttaaa
gacctatttgatttctgtgctcgtatcgatctcaaacgtgttaacaaacgcgtcatcgaa
aagctgatttatgcaggtgcacttgaccgacttggccctcatcgagcggcgatgatggcg
tcactgaacgatgccgttaaagcggccagccaacatcaccaagcagaggcctttggccaa
ggcgatatgtttggtgtgttgaccgatgcaccagaagaagttgagaataaatacacgcaa
gtgccaccatggccagaaaaggtttggctagaaggggagcgcgaaactctcggtttatat
ttgaccgggcaccccattaacgcgtatttaaaggaactaaacaaatacaccagttgtcga
ctaaaagacgcgaccccaacacgtcgcgatcaatcggtaacggtagcaggtttagttatt
gctgcgcgagtgatgacaaccaagcgaggtactcgcattggtatcatgacgttggacgac
cgaagtggtcgaatggaagtaatgctgttctccgatgcacttgatcggtatgctgaactt
ctcgaaaaagacagaattttggtggtttcgggacaggtcagctttgatgacttcaacggt
ggccttaaaatgtcggcgcgtgaagttatggatctcggcagcgcgcgcgaaaaatacgca
cgtggtctgtcggtatcaattgatgcgaaccagatcaatgatcaattctttgagcagttt
agtcgtattttagaaccgcacaaagccggaaccgtacccgtcaatgtatactaccagcgt
gccgacgccagagcgcggttaacattgggcaccgaatggcgagtaacgccaagtgataca
ttaatagacgatttaaaacagttgcttggcaaaagccaggtagaactcgaatttaactaa
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