Vibrio parahaemolyticus RIMD 2210633: VP2340
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Entry
VP2340 CDS
T00120
Name
(GenBank) putative ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VP2340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpa03019
]
VP2340
03400 DNA repair and recombination proteins [BR:
vpa03400
]
VP2340
Enzymes [BR:
vpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VP2340
Messenger RNA biogenesis [BR:
vpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VP2340
DNA repair and recombination proteins [BR:
vpa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VP2340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Enoyl_reductase
DDE_3
Motif
Other DBs
NCBI-ProteinID:
BAC60604
UniProt:
Q87MB5
LinkDB
All DBs
Position
1:2452565..2454529
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AA seq
654 aa
AA seq
DB search
MYSSLSPKKGFPNMQSTQLLQTLQSVFGFDSLRQGQQPVIESVMNGYSAAAIFPTGSGKS
LCYQLPATMLPNLTLVISPLLALMKDQLSFLQSKGIAAASIDSSQSREEAQRVMVGVKNG
EIKILMISVERLKNERFREFIRQVPISLMVVDEAHCISEWGHNFRPDYLKLPQYQRELNI
PQTLLLTATATPAVIEDMKNKFDIASDHITVTGFYRSNLDISVIPCEESEKQTQLNTIVA
AAPKLPTIVYVTQQQTAEQVAKSLIHIGVNAHAYHAGMKSEVREQIQQQFMAGQIDCIVA
TIAFGMGVDKSDIRRVIHFDLPKSIENYAQEIGRAGRDGQRSECILLGNTSGLTVLENFV
FGDTPERSSISYVLGQIKEHQPQWEVVPLRLSRESNIRQLPLKTLLVYLELAKVIEAKFS
YFAEYRFKFLQNQQFIVNQFQGERREFVEAIFTCSTKAKVWCQVDLDALWMHYHSERSRV
VAALDYFHQNGWVELESKQLTDVYSVLPDTQNIEDITQHLYELFQSKERKDIDRIHAMLG
LFQSSDCLSHQLASYFADHNAPAHCGHCSVCRGQRSVFPPRIYDQPEPAVASAWIAEFVQ
LSPSAISNEAIARFLCGISTPLISQLKALKLSGYGALANVSFEQVLQLVESVRE
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtactctagtctatcaccgaagaaaggtttccctaacatgcaaagtacccagttacta
caaacgcttcaatccgtgtttggttttgactcattacgccaaggccaacaaccagttatt
gaatcggtcatgaatggttactctgcagcagcaatattcccaacgggctcgggcaaatct
ctttgttatcaactccccgccaccatgctgccaaacctcactttagtgatctcgccatta
ctggcgctaatgaaagatcagctgagctttttgcaaagcaaagggatcgctgccgcttct
attgatagcagccaaagcagagaagaagcgcaacgcgtaatggttggagtcaaaaacggg
gaaatcaaaattttgatgatttctgtcgaacgcctcaaaaacgagcgctttcgcgagttc
attcgtcaagtgccaatctctttgatggtagtcgatgaagcgcactgtatctctgagtgg
ggacataacttccgtccggattacctcaagttgccgcaatatcagcgagaactgaatatt
cctcaaaccttattgctgaccgccacagcaacgcccgccgttattgaggacatgaaaaat
aaattcgatattgcgagtgaccacattactgtaactggcttttaccgttcgaacctcgat
atttcagtcatcccttgcgaagagtccgaaaagcaaacgcaactcaacacgattgtcgcc
gcagcccctaaactgccaaccatcgtttacgtaacgcaacagcaaactgcagagcaagtg
gctaagtcattgatccacattggcgttaacgctcatgcgtatcatgcaggaatgaaaagt
gaagttcgtgagcaaatacaacagcaatttatggcgggccaaattgactgcattgtggcc
acgattgcctttgggatgggtgtcgacaaatccgatattcgccgagtgatccactttgat
ctgcctaaatccattgaaaactatgcccaggaaataggtcgagcaggacgagacggacaa
cgctctgaatgcattctgcttggcaatacttctgggctaactgtattagaaaactttgtg
tttggcgacacgcctgagcgctcttcgattagttatgtattgggtcaaatcaaagagcac
caacctcagtgggaagtcgtgccactacgtttgtctcgcgagagcaatatccgccagtta
ccactcaagacgctgttggtgtatttagagcttgcgaaagttatcgaggctaagtttagc
tactttgccgaatatcgattcaaattcctacaaaatcagcaattcatcgttaaccaattc
caaggagaacgacgcgagtttgtagaagccattttcacttgttcaaccaaagcgaaagta
tggtgccaagtcgatctcgatgctctttggatgcattatcactcggaacgtagccgcgtt
gtcgctgcactggattactttcatcagaatggttgggttgaactagaaagcaagcagcta
accgatgtgtattccgtcttgcccgatacacagaatatcgaagacatcacgcaacatctg
tacgagctgttccaatctaaagagcgcaaagacatcgaccgaattcacgccatgttgggg
ttgttccaatcgtcagattgtttaagtcatcaattagccagttactttgccgaccacaat
gcccctgctcactgcggtcattgttctgtgtgtcgaggacagagatcggtgttcccacct
cggatttacgatcaacctgaaccagcagtcgcctccgcttggattgcagagtttgtccaa
ctttccccttctgcaatcagtaacgaagccatagcccgattcttatgtggcatcagcaca
ccgttgatcagccaacttaaagccttaaagctatctgggtatggtgcattggctaatgtg
tccttcgaacaggtactacaattagttgaaagtgtgcgggaatag
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