Vibrio parahaemolyticus RIMD 2210633: VP2446
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Entry
VP2446 CDS
T00120
Name
(GenBank) c-di-GMP phosphodiesterase A-related protein
KO
K20965
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VP2446
Enzymes [BR:
vpa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
VP2446
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_4
PAS_8
PAS_9
PAS
Motif
Other DBs
NCBI-ProteinID:
BAC60709
UniProt:
Q87M12
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All DBs
Position
1:2565977..2568016
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AA seq
679 aa
AA seq
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MPSQQLQHWFATLTSNSPFFFAILDKKHNYRMVSDRYCDIAGLNHEEIIGLNDCQVLGEQ
FYKKLAPYYQRAFKGVHVEAEITLDETDLETSLHFSLSPVYEGNEVRFVVFHAVDTSEKQ
ILVRSLEEAENKFAKLTQLLPDGLLLIEDDTIISANPASARLLGLNSPHELLGEELSRLF
IDENTKKVFSHRLSTLISDKPFVCLTSARCGFERKVQLHADSTAILGSESQIILIQDADD
TPKHLSSASSEDSHIDSLTKLYNRFGFTKRLEQLIKSQTPLLVFYLDIDNFKNINDSLGH
HIGDKVIQEVSARLKRLLPNQAIIGHLGGDEFGIILPEPENSRMAEVLSDRIISLINQPF
DLHHFSKRLACSIGSVRYPEDGQDARILLQNADTAMYEAKDRGRNRLIKFNDQMNKEARM
RLWLEIELQKALQQNGLEVWYQPKVNARDFSINGAEALVRWKHPVEGYISPGSFIPVAER
AGLIEHLGRVVMRDVFNTVKRWKQQGILPGRVAINLSPEQFGNPQLIDFMEKLLRTTELD
PSCITFELTESAVMSDSEHTLQMLNAIKKLGFALSIDDFGTGYSSLSYLARFPIDELKID
RAFINDIDALPKQVTVIENIINLGKSLELTVVAEGVETHQQATLLSNLQCNSIQGFHFYR
PQPKHEIEELFVQNRRHKN
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgccttcccagcaattacaacattggtttgccacgctaacctcaaatagccctttcttt
tttgccattcttgataaaaaacacaattatcgaatggtgagtgaccgctattgtgatatt
gcaggcttaaatcatgaagaaatcatcgggttaaacgattgccaggtgctaggtgagcag
ttttataagaagctggcaccttactaccaacgcgcattcaaaggcgtgcatgtcgaagct
gaaattaccttagatgaaaccgatttagagaccagccttcactttagtttgtcaccagtg
tatgaaggtaacgaggtacgtttcgtggtgtttcacgccgtcgacacctccgaaaagcaa
atacttgtccgctctctggaagaagccgaaaacaaatttgccaagctgacccaattattg
cccgatggcctgctgctgattgaagatgacaccatcatctcagcaaaccctgcttcggct
cgtctgcttgggcttaactcccctcacgagctgctcggtgaagagctctctcgcttgttc
atcgacgaaaacaccaaaaaagttttcagtcaccgactcagcacgcttatttcggacaaa
ccgtttgtttgcctgactagcgcgcgttgcggatttgagcgcaaagtccaattgcatgcg
gactcgacggcaattctaggcagtgaatctcaaattattcttatccaagatgcggatgac
acaccaaaacacttgtcgtcggcctccagtgaagattctcatatcgactctttaaccaaa
ctgtataaccgatttggtttcaccaagcgcctagaacaactgatcaaaagccaaacaccg
ctattggtgttttacctcgatatcgataactttaagaacattaatgactcgctgggtcat
cacatcggtgacaaagtcatccaagaagtttctgcgcgtttaaaacgactgctgccaaac
caagcgatcatcggccatcttggcggtgatgagttcggcatcattcttcctgagccagaa
aactcacgcatggcagaagtgttatcagatcgcattatttctttgataaaccaacctttt
gatctgcaccacttcagtaaacgtcttgcttgctcaatcggtagcgtccgctatccggaa
gatgggcaggatgctcgtatcttgctacaaaacgccgataccgcaatgtacgaagccaaa
gatcgcgggcgaaaccgtctgatcaaattcaatgaccaaatgaacaaagaagcgcgtatg
cgtttgtggctcgaaatcgaactgcaaaaagccctgcagcaaaatggtcttgaagtttgg
tatcaacccaaagtgaacgcccgtgatttcagtatcaatggcgctgaggctttagtacgt
tggaaacatccggttgagggctacattagcccaggatcatttattcctgtggcggaacga
gcaggtttgattgagcatcttggccgcgtggtgatgcgtgatgtattcaacaccgtaaaa
cgctggaagcaacaaggcattttgccgggtcgcgtcgcgatcaacttgtctccagaacag
tttggcaaccctcagttgatcgactttatggagaagctgctgcgcacaaccgaacttgat
ccaagttgcatcacgtttgagctaacggaaagcgcggtgatgagtgacagcgaacatacg
ctgcaaatgctgaatgcgattaaaaagctgggctttgctttgtcgatcgacgactttggc
actgggtattcgtcactgtcgtatttagctcgtttcccgattgatgaactaaaaatcgac
cgagcattcattaatgacattgacgccctgccaaaacaggtgaccgtcatcgagaacatc
atcaacttgggcaaatctttggaactaacggtcgttgcagaaggcgtagaaacgcatcag
caagctactttgctttccaaccttcaatgtaactcgattcaaggttttcatttctaccga
cctcagccaaaacatgaaatcgaagagttgtttgtgcaaaaccgccgccacaaaaactga
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