Vibrio parahaemolyticus RIMD 2210633: VP2670
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Entry
VP2670 CDS
T00120
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa02020
Two-component system
vpa02040
Flagellar assembly
vpa05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
VP2670
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
VP2670
09142 Cell motility
02040 Flagellar assembly
VP2670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpa03021
]
VP2670
Transcription machinery [BR:
vpa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
VP2670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
IPPT
Motif
Other DBs
NCBI-ProteinID:
BAC60933
UniProt:
Q87LE2
LinkDB
All DBs
Position
1:2818936..2820402
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AA seq
488 aa
AA seq
DB search
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEEGHEEPQANG
EDKSALETADNSANEPTEIEVPDSSDVIEKSEISSELEIDTTWDDVYSANTGSTGLALDD
DMPVYQGETTESLHDYLMWQLDLTPFSETDRTIAIAIIDAIDDYGYLTLSPEEIHESFDN
EDIELDEVEAVRKRIQQFDPLGVASRNLQECLLLQLATFPEDTPWLAEAKMILADHIDHL
GNRDYKLVIKETKLKEADLREVLKLIQQLDPRPGSRITPDDTEYVIPDVSVFKDHGKWTV
SINPDSIPKLKVNQQYAQLSKGNSADSQYIRSNLQEAKWLIKSLESRNETLLKVARCIVE
HQQDFFEYGEEAMKPMVLNDVALAVDMHESTISRVTTQKFMHTPRGIFELKYFFSSHVST
DNGGECSSTAIRALIKKLVAAENTAKPLSDSKIAALLADQGIQVARRTIAKYRESLGIAP
SSQRKRLL
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccttcattacaactcaagctaggtcaacagttagccatgacgccacagttgcaa
caagcgattcgcttgctgcagttgtcgactctcgatcttcaacaagaaatccaagaagca
ctggactcaaacccgctattggaagttgaagaaggccacgaagaacctcaagcaaatggt
gaagacaaatcagcactcgaaactgctgacaacagtgccaacgagccaacagaaatcgaa
gttcctgatagttctgacgtcatcgaaaagtccgaaatcagctcagagcttgaaatcgac
acaacttgggatgacgtctacagcgcaaatacgggcagtaccggtttagcgttagacgat
gatatgccggtctaccaaggcgaaaccacagaatcgctgcacgattacttaatgtggcaa
ctcgacttaacgcctttcagtgaaaccgaccgtacgattgccattgccatcattgatgcg
attgacgattacggctatctgaccctatctcctgaagagattcacgaaagcttcgacaac
gaagatattgagttggatgaagtcgaagccgtgcgcaaacgcatccaacagtttgacccg
cttggtgtggcatcgcggaacctgcaagaatgcttactcctgcaacttgcaaccttccca
gaagacacgccttggcttgcagaagccaaaatgattcttgccgatcacatcgatcacctt
ggcaatcgcgattacaaactggtcatcaaagaaactaagctaaaagaagcggatctacgc
gaagtattaaaactgatccaacagttagatcctcgtccgggcagccgcattaccccagac
gacacagaatacgtcattccggacgtatcggtatttaaagatcatgggaaatggaccgtt
tccatcaaccctgacagcattccaaagttaaaagttaaccaacaatacgctcaattaagc
aaaggcaacagtgcggatagccagtacattcgcagcaatttgcaagaggcaaaatggtta
attaagagcttagagagcagaaacgagacgctactcaaagttgcaagatgtattgttgaa
catcaacaagatttcttcgagtatggtgaagaagccatgaagccaatggtactcaatgat
gtagccttggcggtggacatgcatgaatccacaatatctcgtgttacgacacaaaagttc
atgcatacgccacgtggcatttttgaattgaagtacttcttctccagccacgtcagtaca
gacaatggcggagaatgttcgtcaacagcaatccgcgcactcattaagaaactggtcgcg
gcagagaatactgctaaaccacttagtgacagtaagattgctgctcttctggctgaccaa
gggattcaggtcgcaagacgtacgatagctaaatatcgagaatccttgggtattgcccct
tcaagtcagcgtaaacgcctactttaa
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