Vibrio parahaemolyticus RIMD 2210633: VP2708
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Entry
VP2708 CDS
T00120
Name
(GenBank) MSHA biogenesis protein MshH
KO
K18765
RNase E specificity factor CsrD
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpa03019
]
VP2708
Messenger RNA biogenesis [BR:
vpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
VP2708
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
BAC60971
UniProt:
Q87LA4
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All DBs
Position
1:complement(2862567..2864576)
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AA seq
669 aa
AA seq
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MRYTPTLKLSTRLVAFVTMIVICAMFILFVGGTLSFKRLGQEYLTHYLEGIVEVVDKEME
DPDAAYSMQRWMPKMLQASNIVEMTLSTNNAVVYRFKDTSHQIEASALFETEYQLTHNQD
YVIRFKAIPPYLGYSYSMQALWSITLAVILIIFCLMRGVAWLKEQLAGSEMLEERGRMIL
AGRVEQYAKGDKKEWPYTASEALDVLIEELQDARQERSRFDTFIRTQTFLDKLTGTANRV
LFDSKLESALLESGARGAVLLIRIQDWKLVEEEQDKQITDEFIVEVGSLLSNLVQRYPDV
VFSRYYDADFALFLPHQSAKDVANLASQCIRQLEKLTPPDPLDPDNWCHIGITMYKEGER
HSQIIDEAETALRSAQLQNNNNWSRFKKWNHDEEARGSVRWRTLFDTALTSENVILYAQS
VHSISDATHKKALHEELTCRIRDPENGIVKASRFISAIRQVGYEAQMDRAVLHKFLKDFK
ENFDSSKNYALNLNVTPFSSREYFKWFRDELLQLSREQRKCLNFEFVEAQFVRHLDFMRP
VAKMLAGLGCHLMVGQAGRTIVSTHYLKEVDIRYLKLHRSLVAKIDQRHENQLFVRSMLG
AAANSKTKIIAVGIENQQELNTLLELGVYGGQGRYFSAEQQYLPRPQTAQHSQSESQVKL
GRRNRWRKK
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgaggtataccccaactcttaagctaagcacgcggctggtggcttttgtcaccatgatc
gttatatgcgcaatgtttatcttgtttgtcggcggcaccctctctttcaaacgacttggg
caagaatatcttacccactacttggaagggattgtcgaggttgttgataaagagatggaa
gatcctgatgcagcttattctatgcagcgttggatgcccaaaatgttgcaagcaagcaac
atcgttgaaatgacgctctcgacaaacaacgccgtcgtttatcggttcaaagacacttcg
catcaaatagaagcgtcggccttgtttgaaactgagtaccagctaactcacaatcaagac
tatgtcatccgctttaaagccatccctccttacttaggttacagctactccatgcaggcg
ttgtggtcgatcactctcgccgttattttgatcatcttttgtttgatgcgcggtgttgcg
tggctaaaagagcagcttgctggttcagaaatgctggaagagcgaggaagaatgatcttg
gcggggcgagttgagcaatacgccaagggagataaaaaagagtggccttacaccgcgagt
gaagcactcgatgtgttgatcgaagaattacaggatgcgcgtcaggagcgcagccgcttt
gatacctttatccgcactcaaacttttctcgataagctcactggaacagccaatcgagtg
ctctttgatagcaagctggaatcggctcttttagagagtggcgcacgtggcgcggtcttg
ctgattcgtattcaagattggaagctcgtggaagaagagcaagataagcaaatcaccgac
gagtttattgttgaagtcggcagcttgttatccaatttagtgcagcgttacccagacgtg
gtgttctctcgttattacgatgccgattttgcactgttcttacctcatcaaagcgccaaa
gatgttgccaacttggcctcacaatgtattcgtcaactagagaaacttacgccgccagat
ccgctcgaccccgacaactggtgccatattggtatcactatgtacaaagagggagagcga
cacagccaaattattgatgaggcggaaacggcactcagaagtgcgcagctacaaaacaac
aataactggagccgttttaagaaatggaaccacgatgaagaagcgcgcggaagtgtgaga
tggcgtacgttatttgatacggcacttacatcagaaaatgtgatactctacgcacaatcg
gttcactcaataagtgatgcgacgcataaaaaagccttacacgaagagttaacatgtcga
attcgggatcctgaaaatggcattgttaaagcgtcccggtttatctctgctatcagacaa
gtgggctatgaagctcaaatggatagagctgtacttcataaattcttaaaagactttaaa
gagaattttgacagctctaaaaattatgctctaaatctaaatgtgacgcctttttcgagt
cgcgaatacttcaagtggtttcgtgatgaactcttacagttgtcacgcgagcagagaaag
tgtctcaattttgagtttgtggaagcacaatttgtaagacacttagactttatgcgacca
gtcgctaaaatgctggccggtttgggatgccatctcatggtggggcaagcgggacgaacc
atcgtcagcactcactacctaaaagaagtggacattcgttatctcaagcttcatcgcagc
ttggtagcaaaaatcgatcagcgacatgagaaccagctttttgtccgcagtatgctaggt
gcagcggcgaacagcaaaaccaaaatcatagcagtgggaattgagaatcaacaagagcta
aacacgcttcttgaattaggtgtgtacggcggacaaggacgctatttttctgcagagcag
caatatcttcctcgcccacaaacagcgcaacattctcaatcagaatcccaagttaaattg
ggaagacgaaatcgctggcggaaaaaataa
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