Vibrio parahaemolyticus RIMD 2210633: VP2890
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Entry
VP2890 CDS
T00120
Name
(GenBank) lysine decarboxylase
KO
K01582
lysine decarboxylase [EC:
4.1.1.18
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa00310
Lysine degradation
vpa01100
Metabolic pathways
vpa01110
Biosynthesis of secondary metabolites
vpa01120
Microbial metabolism in diverse environments
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
VP2890
Enzymes [BR:
vpa01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.18 lysine decarboxylase
VP2890
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Paralog
Gene cluster
GFIT
Motif
Pfam:
OKR_DC_1
OKR_DC_1_C
OKR_DC_1_N
DUF6348
Motif
Other DBs
NCBI-ProteinID:
BAC61153
UniProt:
Q87KT6
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All DBs
Position
1:complement(3073839..3075974)
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AA seq
711 aa
AA seq
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MNIFAILNHMGVFFKEEPVRQLHAALEKAGYEVVYPVDDKDLIKMIEMNPRICGVLFDWD
KYSLELCERISQINEKLPVHAFANEQSTLDISLTDLRLNVSFFEYALGMADDIAIKINQA
TEAYKDAIMPPFTKALFKYVEEGKYTFCTPGHMGGTAFQKSPAGSIFYDFYGPNTFKADV
SISMPELGSLLDHSGPHKDAEEYIARTFNADSSYIVTNGTSTSNKIVGMYSAPAGSTVLI
DRNCHKSLTHLMMMSDVTPIYFRPTRNAYGILGGIPQSEFSRDVIAEKVAKTPGATAPSY
AVVTNSTYDGLLYNTQFIKESLDCKHIHFDSAWVPYTNFNPIYEGKCGMSGEAMPGKVFY
ETQSTHKLLAAFSQASMIHVKGDFDKESFNEAFMMHTSTSPQYGIVASTETAAAMMRGNT
GKKLMQDSIDRAIRFRKEIKRLEAESDSWFFDVWQPENIDTTECWKLDPSDTWHGFKNMD
DNHMYLDPIKVTLLTPGMNKEGELEESGIPASLVAKFLDERGIVVEKTGPYNLLFLFSIG
IDKSKAMQLLRGLTEFKRGYDLNLTIKSFLPSLYNEDPSFYEGMRVQELAQAIHDLTKKY
NLPELMYKAFDVLPEMKVTPHAAWQEELRGNVEEIKLEEMVGRVSANMILPYPPGVPLVL
PGEMVTQESRPVLDFLEMLCEIGAHYPGFETDIHGLYQQKDGSYTVKVLKN
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaatattttcgctatcttgaaccacatgggtgtgttctttaaagaagagccagttcgt
caacttcacgctgctcttgagaaagcgggctacgaagtggtttacccagtagatgataaa
gacttgatcaaaatgattgagatgaacccacgcatttgcggtgtgctgttcgactgggat
aaatactcactagagctatgtgaacgtattagccagatcaacgaaaaactgcctgttcac
gcatttgctaacgaacagtctactctcgatatttcactaacagacctacgtctaaacgtg
agcttcttcgagtacgctttaggtatggctgacgacatcgctatcaaaatcaaccaagcg
actgaggcatacaaagatgccatcatgcctccattcactaaagcgctattcaaatacgta
gaagaaggtaaatacaccttctgtactccaggtcacatgggcggtactgcattccagaaa
agccctgctggtagcatcttctatgatttttacggtccaaacacattcaaagcggacgta
tcaatctcaatgcctgagttaggttctctactagaccactcaggtcctcataaagatgca
gaagaatacatcgcacgtaccttcaatgcagacagttcttacatcgtaactaacggtacg
tctacatcgaacaaaatcgtgggcatgtactcagcacctgcgggcagcacagtactgatt
gaccgtaactgtcacaaatctctgactcacctaatgatgatgagcgacgtgacaccaatc
tacttccgcccaactcgtaacgcatacggcatccttggtggtattccacaaagcgaattc
agccgtgatgtcattgcagagaaagtggcgaaaacaccaggtgcaacagcgccaagttac
gcagtagtgactaactcaacttacgatggtctgttgtacaacacacaattcatcaaagag
tcgctagactgtaaacacatccacttcgacagtgcttgggtgccttacactaacttcaac
ccaatttacgaaggtaaatgtggtatgagtggtgaagcgatgccaggcaaagtgttctac
gagacacaatcaacacacaaactgttggcagcgttctcacaagcttcaatgattcacgtg
aaaggtgactttgataaagagtctttcaacgaagcattcatgatgcacacttcaacttca
cctcagtacggcattgttgcttctactgaaactgcagcggcaatgatgcgcggcaacact
ggtaagaagttgatgcaagactctatcgatcgcgcaattcgcttccgtaaagagatcaaa
cgcctagaagcagaaagtgacagctggttcttcgatgtatggcaaccagaaaacatcgat
accacagaatgttggaaactagaccctagcgatacatggcacggcttcaagaacatggat
gacaaccacatgtatcttgacccaatcaaagtaacgctactgactccagggatgaacaaa
gaaggcgaactagaagaatcaggtattcctgcttcgctggtggctaaattcctagacgag
cgcggcatcgtggttgagaaaacaggcccatacaacttgttgttcctattctcaatcggt
atcgacaaatcaaaagcaatgcaattactacgcggtctgactgaatttaaacgtggctac
gacttgaacctaaccatcaagagcttccttccttcgctatataacgaagatccaagcttc
tatgaaggcatgcgcgttcaagaattggcacaagcaattcatgacctaactaagaaatac
aacctaccagagctaatgtacaaagcgttcgatgttcttccagaaatgaaagtaacacca
cacgcagcatggcaagaagagcttcgcggtaacgtagaagaaatcaaactggaagaaatg
gttggtcgcgtaagtgcgaacatgatccttccttatcctccaggtgtgccactagtactt
cctggtgaaatggtgactcaagagtctcgccctgtgctggacttcctagagatgctttgt
gagatcggggcgcattacccaggtttcgaaaccgatatccacggtctgtaccaacaaaaa
gatggtagctacaccgtaaaagtattgaagaactaa
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