Vibrio parahaemolyticus RIMD 2210633: VP3007
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Entry
VP3007 CDS
T00120
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VP3007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpa03019
]
VP3007
03400 DNA repair and recombination proteins [BR:
vpa03400
]
VP3007
Enzymes [BR:
vpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VP3007
Messenger RNA biogenesis [BR:
vpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VP3007
DNA repair and recombination proteins [BR:
vpa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
VP3007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
BAC61270
UniProt:
Q87KH0
LinkDB
All DBs
Position
1:complement(3209122..3210957)
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AA seq
611 aa
AA seq
DB search
MTSTLLAEQSDSPVTPQRVLEEVFGYQTFRDGQQEVIESAVEGKDSLVIMPTGGGKSLCY
QIPALVRSGITLVISPLISLMKDQVDQLKANGVAAECVNSTMSREELLSVYNRMHSGQLK
LVYVSPERVLMRDFIERLENLPLAMIAVDEAHCISQWGHDFRPEYAALGQLKQHFSHVPF
MALTATADDATRRDILERLRLHEPHVHLGSFDRPNIRYNLVEKHKPISQIIRYLDTQKGN
CGIIYCGSRKKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFG
MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDD
GPQKQVESHKLNAMSAFAEAQTCRRQVLLNYFGEYREKPCGNCDICLDPPKHFDATEEAR
KALSCVYRVNQSFGMTYVVEVLRGMQNIRVREHGHDKISTYGIGRDHSHDYWVSIFRQLI
HKGLLFQNITRNSTLQLTEEARPLLRGDVSLELAVPRLDTAARAAKSDKLTSKNYDKKLF
AKLRKLRKSIADEDGLPPYVVFSDATLIDMAEILPTSYGEMLAVSGVGQRKLEKYADPFL
DLIQEHITHHG
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgacctcaactttgttagccgaacaatcagactcaccggtaacgcctcaacgtgtgttg
gaggaagttttcggttatcaaacgtttcgtgatggccagcaagaggtcatcgaatcggcg
gtcgagggcaaagacagtctggtgatcatgccgacaggtggtggcaaatctctttgctat
cagatacctgcgttggttcgtagtggcatcaccttggtgatttcgccgctgatttctttg
atgaaagaccaggtcgatcagctcaaggctaacggcgttgcggcagagtgtgtgaactcc
accatgagtcgtgaagagctgctgagtgtgtataaccgcatgcacagcggtcaactcaaa
ttggtttacgtctcaccagaacgcgtgttaatgcgtgacttcatcgagcgactcgaaaac
ctacctttggcgatgattgcagtggatgaagcgcactgtatctcgcagtgggggcacgat
ttccgtcccgaatacgccgcgctgggtcagctaaagcagcatttttcgcatgtgccattt
atggcgctcaccgccactgcggatgacgctacacgtcgcgacattcttgaacgcttacgt
ttgcatgaacctcatgtccacttaggcagttttgaccgtccgaatattcgctacaacctg
gtcgagaagcataagccgatttctcagatcattcgttatctcgacacccaaaagggcaat
tgcggcatcatttactgtggtagccgtaagaaagtcgaaatggtgacggagaagttgtgc
aacaaccacatccgtgcggcgggctatcatgcagggatggacgctgatgagcgtgcttac
gttcaagaggcgtttcagcgtgatgacattcaaatcgtggtcgcgacggttgcctttggt
atgggcatcaacaagccgaacgtccgttttgtggtgcactttgatattccgcgcaatatt
gaatcctactaccaagaaacgggacgagcagggcgagatggtttacctgctgaagcgatg
atgttgtacgaccccgcagacatcagttggctacgccgcatgctggatgaaaaagacgat
ggaccgcaaaagcaagtagaaagccataaacttaatgcgatgagtgcctttgcagaagcg
caaacctgtcgtcgtcaggttctgctcaactactttggtgaataccgcgagaagccttgt
ggtaactgcgatatctgcctcgatccacccaaacattttgatgcgacagaagaagcgcga
aaagcgttgtcgtgtgtttaccgcgttaaccaaagctttggtatgacgtatgtggttgag
gtgctgcgtggtatgcaaaatatccgcgtgcgtgaacatggccacgacaagatctctaca
tacggtattggccgcgatcacagtcatgattactgggtgagtatcttccgccagttaatc
cacaaaggactgttgtttcaaaacatcacccgaaactcgacgttgcaattgaccgaggaa
gctcgaccattattgcgcggggatgtgtcgctcgagctagcggttcctcgtttggatacc
gcagcacgcgctgcgaagtcggacaaactgaccagcaaaaactacgataagaagctgttt
gcgaaattacgcaagctgcgtaagtcgattgctgatgaagatggcttaccaccatacgtt
gtatttagtgatgcgaccttgattgatatggcggagattctgccaacgtcgtatggcgaa
atgctggcggtgagcggggtaggtcaacgtaaattagaaaaatatgccgatccattcttg
gatctgattcaagaacacatcactcaccacggataa
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