Vibrio parahaemolyticus RIMD 2210633: VP3013
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Entry
VP3013 CDS
T00120
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa03420
Nucleotide excision repair
vpa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
VP3013
03430 Mismatch repair
VP3013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpa03400
]
VP3013
Enzymes [BR:
vpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
VP3013
DNA repair and recombination proteins [BR:
vpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VP3013
MMR (mismatch excision repair)
Other MMR factors
VP3013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BAC61276
UniProt:
Q87KG4
LinkDB
All DBs
Position
1:complement(3216340..3218514)
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AA seq
724 aa
AA seq
DB search
MMDPSLLLDDLNDKQREAVAAPLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMS
VTFTNKAAAEMRGRIEELMMGSASGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQ
QRLLKRLIKAQNLDEKQWPARQVAWWINGKKDEGLRPAHIDAYHDPVTKTYLQLYTAYQE
ACDRAGLVDFAEILLRAHELLRDNKFVREHYQARFKHILVDEFQDTNNIQYAWLRMMTGP
ECHVMIVGDDDQSIYGWRGAKVENIEKFTREFPSVTTIRLEQNYRSTKTILEASNTLIAN
NTERMGKELWTDGVVGEPISVYSAYNELDEARFAVNKIKEWQDKGGALNDAAMLYRNNAQ
SRVLEEALIQAGLPYRIYGGMRFFERQEIKDALAYMRLMANRNDDAAFERVVNTPTRGLG
DKTLETIRRAARDRGCTMWEASVAMLDEQVLAGRAAGALGRFIELITALEDDTLEMPLHE
QTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKPEEAEEMSLLTAFLTHAA
LEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPETCLDEVRMKAQVSRPASSGRF
SQTAVKENFNETGFSLGSRVMHPKFGEGTIINFEGSGPQSRVQIAFNGEGIKWLVTAYAR
LEKL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatggatccatctctattactcgacgatttgaacgataaacaacgtgaagccgttgct
gcacctctagaaaacttgctcgtccttgctggtgcagggagtggtaagactcgtgttctt
gttcaccgtatcgcttggttgatgtcggtagaacaagcgtctccattctcaatcatgtcg
gtaacctttaccaacaaagcggcagcggagatgcgtggccgtattgaagagttgatgatg
ggcagtgcgtcaggcatgtggaatggtacctttcacggtatttgtcaccgcattttgcgc
gcgcactatcttgatgccaagctaccggaagattttcaaatcatcgacagcgacgatcaa
caacgtttactgaagcgtctgatcaaagcacaaaatctggatgaaaagcagtggcctgca
cgccaagtggcttggtggattaacggcaaaaaagacgaaggcctgcgcccagcacatatc
gatgcttaccacgatcctgtgaccaaaacctacttgcagctatacaccgcttatcaagaa
gcgtgtgaccgtgcaggtttggtcgactttgcagaaattctgcttcgcgctcatgagcta
ctgcgcgataacaagtttgtccgagagcactaccaggcacgctttaaacacattctggtt
gacgagttccaagacaccaacaatatccaatacgcttggctacgcatgatgacggggcct
gagtgtcatgtgatgatcgtgggtgacgatgaccagtcgatttacggttggcgcggagca
aaagtcgaaaacattgagaaattcacccgtgaattcccaagcgtaaccaccattcgccta
gagcagaattaccgttccaccaagaccattttggaagcttccaataccttgatcgccaat
aacactgagcgtatgggtaaagagctgtggactgacggcgtcgttggtgaaccgatttcg
gtttacagtgcttacaacgagttggacgaagcccgttttgcggttaacaaaatcaaagag
tggcaagacaaaggtggagcattgaatgatgcagcgatgttgtaccgcaacaacgcccag
tcccgtgtactggaagaagcgttgattcaagctggtctaccataccgtatttatggtggt
atgcgattcttcgagcgtcaggaaatcaaagacgcacttgcctacatgcgtttgatggct
aaccgcaatgatgatgctgcatttgaacgtgtggtgaatacgccaactcgtggtttaggt
gacaagacactagaaaccattcgccgtgcggcgcgtgatcgtggttgcacgatgtgggaa
gccagcgttgcgatgttggatgaacaagtgctcgcgggtcgagcggcgggggcattaggt
cgctttatcgaacttattaccgcactcgaagacgacacgttagagatgccgttgcacgag
caaacagaccatgtgatcaagtactctggcttgtttgccatgtatgagcaagagaagggc
gaaaagtctaaggctcgtattgagaacttggaggaattggtgaccgcaactcgtcaattc
gagaagccagaagaagcggaagagatgtcgctgctgactgcgttcttgactcatgcggcg
ctagaagcgggtgaagggcaagccgacgaatttgaagatgcagttcaattgatgacactg
catagtgcaaaaggcttggaattcccattggtgtttatggtgggcgttgaagaaggcatg
ttcccaagccagatgtcggcggaagaggctgggcgtttagaggaagagcgccgcctgtgc
tacgtcggtatgacgcgcgcgatgcaaaaactctacatcacttatgcggaaatgcgccgt
ttgtatggtcaagataagtaccataagccatcgcgttttattcgtgagttgccggaaacg
tgcctggacgaagtgcggatgaaagcgcaagtcagccgacctgcaagtagtggtcgcttt
agccaaactgcggtgaaagagaacttcaacgagacgggcttttcacttggttcacgcgta
atgcatccaaagtttggcgaaggcaccatcattaactttgaaggcagcggtccacagagt
cgcgttcaaatcgcgttcaatggtgaaggcattaaatggttagtgactgcttacgctaga
ctagaaaaactgtaa
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