Vibrio parahaemolyticus RIMD 2210633: VPA0485
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Entry
VPA0485 CDS
T00120
Name
(GenBank) putative formate dehydrogenase, alpha subunit
KO
K00123
formate dehydrogenase major subunit [EC:
1.17.1.9
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa00630
Glyoxylate and dicarboxylate metabolism
vpa00680
Methane metabolism
vpa01100
Metabolic pathways
vpa01120
Microbial metabolism in diverse environments
vpa01200
Carbon metabolism
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
VPA0485
09102 Energy metabolism
00680 Methane metabolism
VPA0485
Enzymes [BR:
vpa01000
]
1. Oxidoreductases
1.17 Acting on CH or CH2 groups
1.17.1 With NAD+ or NADP+ as acceptor
1.17.1.9 formate dehydrogenase
VPA0485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Molybdopterin
Pyr_redox_2
Molydop_binding
Fer4_20
Molybdop_Fe4S4
Pyr_redox
Pyr_redox_3
Fer2_4
NAD_binding_8
Fer4_7
Fer4
Fer4_9
Fer4_6
FAD_oxidored
DAO
FAD_binding_2
Thi4
Fer4_16
NAD_binding_7
Fer4_2
HI0933_like
Fer4_8
FAD_binding_3
Fer4_10
Fer4_18
Fer4_21
Fer4_15
Amino_oxidase
Fer4_22
AlaDh_PNT_C
Fer4_4
Fer4_Nqo3
Fer4_17
2-Hacid_dh_C
Motif
Other DBs
NCBI-ProteinID:
BAC61828
UniProt:
Q87IX1
LinkDB
All DBs
Position
2:487745..492013
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AA seq
1422 aa
AA seq
DB search
MIEIVIDGKYRIVEEGLTLLEAAKVCGVEIPSLCGMNKSNEKIPCDLCVVEVESGGTKRA
CDLKVYRGLNVVTQSEQLSEHRRKALNRIMTDHYADCEAPCKTACPAGVDIQSYLYHISQ
NDHQKAIEVIKRTLPMPLSIGRVCPAFCESECRRSLVDEPIAIRQLKRHAADADLAAHEA
YVPEKKPAKHRKIAVVGSGPGGLTAGYYLSNEGYDVTIFESMPKAGGWLRYGIPEYRLPK
DILDKEIELMCRNGMQVETNKKLGVDFTLSQLSEDYDAVCLAVGASQAVEMNYPGSDLDG
CYLGVDYLKDYVTEQNYVTGKKVAVIGGGNTAIDCARTARRAGADTTLIYRRTRDEMPAE
DYEIVEAEHEGVTFHFLTNPAENIADENGRVKAIRLERMALGEPDASGRRSPKPTGEFFT
EAFDTVIAAVSQKPDLSFLENDDLSIPLTRWNTSESDSQTMHTGTGNIFSIGDFRRGPAT
AVEAVGDGRVAAKAIDLFLNGDMADMPKPAFNSRKEKKLAQVDPLHFENIQKVARSIMPE
LTPAQREQSFAEVELGFDNEEAMKEAARCLECGCQANTDCALRDYSTEYHAEQHFDVSVD
VSSASVIGHQDWLDLRAKDLRHKYEVDRSSEFIEFDANRCISCGQCIQACREQAVHGVLS
FVSDKNGRPALRPDDRPRFRSDEKGVGCSGLTLMGDSKCVQCGVCVQACPTGAMVDSRDR
SQGRTEQLKAVDTICTYCGVGCKLTMFVDERQNKIRYVKGADSPVNQGMLCVKGRFGFDF
ISSEERLTTPLIRKDGWLQPATWDEAIQLVASKLSTIKQDFGSNALAGFSSAKTTNEDNY
AFQKFIRRELGTNNVDHCARLCHASSVTGLEASLGSGAMTNDIPSIKHSDVIFIIGSDTT
SAHPIIASHIKQAIRHHGARLIVADPKRVDMAEHAELYLAHRPGTDVMLLNGVMQQIIKN
GWYDQEYIEERVDGFDTLLQEVMSPAYNLDKVELVTGVKADDIFAMARMIGTAKRTAVYY
SMGITQHTTGHDNVRSIANLQLLCGNIGIEGGGINPLRGQSNVQGACDMGALPNCYPGYQ
KVYNPIVRQKFAIEWDAPNLPSEQGLTLTEIIDAACKREVRGMYIMGENPVLSDPNQAHV
IEGLEALDFLVVQDIFLTETAQYADVVLPSCSFAEKSGHFTNTERRVQRVNAAVKAPGEA
KEDWWIIQAIANAMGSDWHYQCVSEITSEIARVTPQYAGLRWDAITPNGVQWPSNKNNPN
GTRIMHQTQFTRGKGQMVGVPFRYAAELPDEEYPLVLTTGRVLEQFHTGTMTRKTKGLDN
LAGPRAMISVEDAEAIGIHNGQRLKVSTRRGNIEIDAFVTKRMQKGVVFIPFHFVESPVN
RLTTTATDPHAKIPEFKVAAVKIEISETAAQPEPVEEAVHHV
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaattgtcatcgatggaaaatatagaattgtagaagaggggctaacccttctg
gaagcagccaaagtgtgtggggtcgaaatcccttcactgtgcggaatgaacaaaagtaac
gagaaaattccgtgtgatttgtgtgttgtcgaagtggagagtggcggaactaagcgcgcc
tgcgatctcaaagtgtaccgcggtctcaatgtcgtcacacaatcagaacaactgagtgag
caccgcagaaaagcgctcaaccgaatcatgacggaccactacgccgactgtgaagctcca
tgcaaaacggcgtgtcctgctggagtagacatccaatcttacctctaccatatctcgcaa
aatgatcatcaaaaagcgattgaagttattaaacgcacactgccaatgccgttgtcgatt
gggcgcgtgtgtccggcattctgcgaaagtgagtgtcgccgctctttggtggatgagccg
attgccattcgccaactcaaacgccatgccgcagacgcagatttagcggcgcatgaagcg
tatgtcccagagaaaaaaccagcgaagcatcgcaagatcgccgttgttggtagtggcccc
ggtggcttaacggcaggttattacttgtcgaatgaaggttatgacgttaccatatttgag
tccatgccaaaagcaggcggttggctacgctacggtattcctgaatatcgcctacccaaa
gacattctagacaaagaaatcgaactgatgtgccgcaacggtatgcaagttgaaaccaac
aaaaagcttggtgttgatttcacgctgtcgcaattgagtgaagactacgatgctgtctgt
ttggccgtgggggcgtctcaagcggtagaaatgaattatcctggtagcgacttggacggt
tgttatctcggtgttgattacctgaaagattacgttacagaacaaaactacgttacgggc
aaaaaagttgccgtgattggtggtggtaacactgcgatcgactgtgcgcgtacggcgcgt
cgtgcgggtgccgataccactttgatctatcgtcgaactcgcgacgaaatgccggccgaa
gactacgaaatcgtcgaagctgaacatgagggcgtgacgttccatttcttaacgaatccg
gcggaaaacatcgcggatgaaaacggccgcgtgaaggcaattcgattagaacgaatggcg
ttaggtgagccagatgcgtctggtcgtcgtagcccgaaaccaacgggtgagttctttact
gaagcatttgataccgtgattgcagcggtatcgcaaaagccggatctcagcttcttagaa
aacgatgatttgtctattccactaacacgttggaacacatctgagtccgactcgcaaacc
atgcacacgggtacgggcaatatcttcagtatcggtgattttcgtcgtggtcctgcgact
gcggttgaagcagtgggggatgggcgagttgcggcaaaagcgattgatctgttcctcaat
ggcgatatggcggatatgccgaaacctgcgttcaactctcgtaaagagaaaaaactggcg
caggttgacccacttcatttcgaaaacatccaaaaagttgctcgttcaatcatgccggag
ttgactccagcgcagcgtgagcagagttttgctgaagtggaactgggctttgataacgaa
gaggccatgaaagaagcggcgcgctgcttagagtgtggttgccaagcgaataccgactgt
gccttgcgagattactcaacggaatatcatgccgagcaacatttcgatgtttccgtggac
gtttcctctgctagcgtgattggccatcaagattggctcgatttacgtgcgaaagatctt
cgtcataaatacgaagtagaccgcagttctgagttcattgaatttgatgctaaccgctgc
atcagttgtggtcagtgtattcaagcatgccgcgagcaagcggtacatggtgtgttgagt
tttgtgtcggataaaaatggccgaccagctttacgcccagatgatcgcccacgattccgc
tccgatgaaaaaggcgtaggttgcagcggtttgacgctcatgggcgattcaaaatgcgtg
caatgtggggtgtgtgttcaggcatgtccaacgggcgcgatggtggacagccgtgaccgc
tctcaaggcagaaccgaacagctaaaagccgtcgataccatttgtacctattgtggtgtg
ggttgtaagttgaccatgtttgtcgatgagcgacaaaacaaaatccgctatgtaaaaggg
gcggattcgccggttaaccaaggtatgctgtgcgtgaaaggccgttttggttttgacttc
attagcagcgaagagcgtttaacgacaccactgattcgtaaagatggttggttgcagcca
gcaacttgggacgaagcgattcagctagtggcttcgaagctttcgaccatcaagcaagat
tttggtagcaacgcactggccggattctcttcagcgaaaaccactaacgaagataactac
gcgtttcaaaaattcatccgtcgtgaactgggtacgaacaacgttgatcactgcgcacgt
ttgtgtcacgcatcaagtgtgacagggcttgaagcatcgttggggagtggtgcgatgacc
aacgacattccaagcattaagcattccgatgtgatctttattatcggttctgacaccaca
tctgcgcacccgatcatcgcttcgcacatcaaacaggcgatccgtcatcacggggcgcgc
ttgattgtggcagacccgaaacgagtagacatggccgaacatgcagagctgtacttggcg
catcgtccgggtacggatgttatgttgctcaatggcgtgatgcagcaaatcatcaaaaat
ggttggtacgatcaagaatacatcgaagagcgcgtagacggctttgataccttgcttcaa
gaggtgatgtcgccagcgtacaacctcgacaaagttgagttagtgacgggcgtaaaagcg
gacgatattttcgcgatggcgcgaatgattggtacggcaaaacgcacggcggtgtattac
tcaatgggtattacccagcatacaacagggcacgacaacgttcgttcgattgcaaacctg
caattgttgtgtggcaacatcggtattgagggtggtggtattaacccactgcgcggtcaa
tcaaacgtacaaggtgcgtgtgatatgggcgcattgccgaactgttatccgggataccaa
aaagtgtataacccgattgttcgtcagaaattcgcgattgagtgggatgcgccgaactta
ccttctgagcaagggcttaccctaacggaaatcatcgatgcggcgtgcaaacgagaagtt
cgcgggatgtacatcatgggcgaaaacccagtactgagcgatccaaaccaagcacacgtg
attgaagggttggaagcactcgacttcttggtcgtgcaagacatcttcctcaccgagacg
gcgcagtacgccgatgtggtattgccttcttgttcatttgcggaaaaatccggtcacttc
accaatactgagcgacgcgtgcagcgcgttaatgcggcagtgaaagcgccgggtgaggcg
aaagaagattggtggatcattcaagcgatcgcaaacgcgatgggcagcgattggcattac
cagtgcgtttctgaaatcactagcgagatcgcgcgtgtaacgccgcaatatgcagggttg
cgttgggacgcgatcacgccgaacggtgttcaatggccaagtaacaagaacaatccaaac
ggtactcgtattatgcaccaaacccaatttacccgagggaaagggcaaatggtgggcgtg
ccgttccgttatgcagccgagttacctgatgaagagtatcctttggtgcttacaacaggg
cgtgtgctagaacagttccacaccggtacgatgacgcgcaaaacgaaagggttggataac
cttgctgggccaagagcgatgatcagtgttgaagatgctgaagcaattggtatccataat
ggtcagcgcctaaaagtctcgactcgtcgtggcaacatcgaaattgatgcgtttgtgacc
aagcgaatgcaaaaaggcgtcgtgtttattcctttccatttcgttgagtcgccagtcaac
cgcttgacgactacggcaacggacccgcatgcgaaaattcctgaattcaaagtcgcagcg
gttaagattgaaatcagtgaaacggccgctcaaccagagcctgtcgaggaggcggtacac
cacgtctaa
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