Vibrio parahaemolyticus RIMD 2210633: VPA0607
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Entry
VPA0607 CDS
T00120
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpa03016
]
VPA0607
Enzymes [BR:
vpa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
VPA0607
Transfer RNA biogenesis [BR:
vpa03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
VPA0607
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
BAC61950
UniProt:
Q87IJ9
LinkDB
All DBs
Position
2:complement(608477..610483)
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AA seq
668 aa
AA seq
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MFQDNPLLAQLKQQIQENLPKKEGSIKATDKGFGFLEVDSKTSFFIPPAYMKKCIHGDKV
VAIIRTENEREVAEPQELIEQSLTRFIGRVKMFKGKLNVVPDHPQLKKLSLKAKLKKGLK
PDNFAEGDWVVAHLVRHPLKGDNTFFVEISEKITDADDKIAPWWVTLAQNDLPNSEPAGI
ENWELKDDADLERIEMTHVPFVTIDGESTKDMDDALYAKKTESGDFELTIAIADPTAYIT
PEDEMDKVARERGYTIYLPGRNIPMLPRDLADNLCSLIEGEIRPAICCTVTVSKDGVIGD
DIKFFAANIKSHARLAYDHVSDWLENGNSDAWQPSEEIATIVRDLYEFSLARAEWREKNA
VVFPDRPDYRFELSEDNDVIAIHADMRRSANRLVEESMITANICAGRTLREKFETGVFNT
HAGLKPEKIEEVVQLVNPEGTLEFTAESIATLEGFAALRRWLAVQETSYLDNRIRKFQAY
SEVGNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKAVILDKEPVQKPDDQVGEELAL
HRKHHKIAERNVSDWLYARTLADEPSKQTCFTGEIFDINRAGARVRLLENGAAAFIPGAL
ILDNKERIECNGDNGTISIDKEVVYKLGDTLEIVLADVNQENRSLVAKPTQVFADQPAPQ
TEQTVSEE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccgctattagcccaacttaagcagcaaatccaagaaaacctgcct
aaaaaagaaggttcaatcaaagcaacagataaaggctttggtttcctggaagtggacagc
aagaccagcttcttcatcccaccagcgtacatgaaaaagtgcattcacggcgacaaagtc
gtggccatcatccgtactgaaaatgaacgtgaagtcgcagaaccacaagagctgatcgaa
caatctcttactcgctttatcggtcgagtaaagatgttcaaaggcaagctaaatgtcgtg
cctgaccatcctcaactaaagaaattgtctctaaaagcgaaactgaagaaaggtttaaag
cctgacaacttcgcggaaggtgattgggttgtagcacatcttgttcgtcacccgctaaaa
ggcgacaacacgttcttcgttgaaatttcagagaaaatcactgacgctgacgacaaaatc
gcaccgtggtgggtaacgctagcgcaaaacgatctaccaaactcagaacctgctggcatt
gagaactgggaattaaaagatgacgccgatctagagcgcatcgagatgactcatgttcct
ttcgtcacaatcgatggtgaatcaaccaaagatatggatgacgcgttgtacgcgaagaaa
accgaatctggtgattttgagttaactatcgcgattgctgacccaactgcttacatcaca
cctgaagacgaaatggataaagtcgcgcgtgagcgtggttacaccatttacctaccaggc
cgtaacatcccgatgttacctcgcgacctagcggacaacctatgctctctaattgaaggc
gaaatccgcccagcaatctgctgcaccgtaacagtgagcaaagacggtgtgattggtgac
gatatcaaattcttcgctgcaaacatcaagtcacatgcgcgcctagcatacgatcacgtt
tctgattggctagaaaacggcaactctgatgcatggcaaccttcagaagaaatcgcaacg
atcgtacgcgatctatacgagttttctctagctcgcgcagaatggcgtgagaaaaacgca
gttgtattccctgaccgccctgactaccgttttgagctaagtgaagacaatgacgttatc
gcgattcacgctgatatgcgccgcagtgcaaaccgtcttgttgaagaatcgatgatcaca
gcgaacatttgtgcaggccgtacactgcgtgaaaaattcgaaactggcgtattcaacact
cacgcaggtttgaaaccagagaaaatcgaagaagttgtgcaactcgttaaccctgaaggt
acgctagaattcacagcagaatcgattgcaacgcttgaaggctttgcggctctacgtcgt
tggttagcggttcaagagacatcttacctagacaaccgcattcgtaagttccaagcatac
agtgaagttggtaaccaacctcttcctcattacgcgatgggtctagacatttatgcgact
tggacatccccgattcgtaaatacggcgatatgatcaaccaccgtatgctaaaagcggtg
attctagataaagaaccagtacaaaaacctgacgatcaagtgggtgaagaactggcactg
caccgtaagcaccacaaaattgctgagcgtaacgtgtccgattggctatacgcgcgcact
cttgcggatgaaccaagcaagcaaacttgtttcacaggtgagattttcgatattaatcgt
gctggtgcacgtgttcgacttctcgaaaatggtgcagcagcctttattcctggtgccctg
attcttgataataaagaacgaattgagtgcaatggcgacaacggcacaatctctatcgat
aaagaggtggtgtacaagctgggtgacacattggaaatcgttcttgcggacgttaaccaa
gaaaaccgcagtttagttgcaaagccaacacaggtatttgctgatcaaccagcaccacaa
acagaacaaactgtaagtgaagaataa
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