Vibrio parahaemolyticus RIMD 2210633: VPA0608
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Entry
VPA0608 CDS
T00120
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VPA0608
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpa03019
]
VPA0608
03009 Ribosome biogenesis [BR:
vpa03009
]
VPA0608
Enzymes [BR:
vpa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VPA0608
Messenger RNA biogenesis [BR:
vpa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VPA0608
Ribosome biogenesis [BR:
vpa03009
]
Prokaryotic type
rRNA helicases
VPA0608
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
WSD
Motif
Other DBs
NCBI-ProteinID:
BAC61951
UniProt:
Q87IJ8
LinkDB
All DBs
Position
2:610863..612794
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AA seq
643 aa
AA seq
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MQDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAF
SLPLLNKLDLDQRKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMR
ALKNGAHVVVGTPGRVQDLINRERLHLDEVNTFVLDEADEMLNMGFVDDVTAIMEHAPES
AQRVLFSATMPPMLKNIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDQVAEARLNKLAAELEAEKEHKALDKFAELVEKLQTSLEIDPAM
LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGREGGRSFNNQDWDTYQLQV
GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSEAASKLSKLRIRQQ
DVGAVVCDFDDFRESRGGRRDGGRRDGGRREGGFRGNREGGNRGGERREGGRREGGFRGN
RDGNREGNREGGERRFDRNRGGDHRGNYRGERGHGRGRRTQDA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgttattcaattcagcgatttatctctgaatgattctatcctttctgct
ctagacggaatgggtttcgtgtcaccaactccaattcaggctgcggcaatcccacaccta
ttggaaggtgctgacgcgctgggtaaagcacagacgggtacaggtaaaacggcagcattc
tctctgcctcttctaaacaagctagatcttgatcaacgtaaaccacaagcaatcgttctt
gctccaactcgtgagctagcgatccaggttgcggctgaaatgaaaaaccttggtaaaaac
atcaagggtcttaaagttctagaaatctacggtggtgcatctatcgtagatcaaatgcgt
gctcttaaaaacggtgcacacgttgttgttggtactcctggccgtgttcaagaccttatc
aaccgtgaacgtctacatcttgacgaagtgaatactttcgtacttgatgaagcggacgaa
atgctaaacatgggtttcgtggacgacgtaactgcaatcatggagcacgctcctgaatca
gcacaacgcgttctattttctgcaactatgccaccaatgctgaaaaacattgttgagcgc
ttcctacgtgatcctgtaactgttgacgttgctggtaaaaaccacactgtagacaaagtt
caacagcagttctgggtagtgaaaggtgtagagaaagatgaagctatgtctcgtcttctt
gaaactgaagaaactgacgcgtcaatcgtattcgtacgtactcgtcaagacaccgagcgt
ctagctgactggctatctgcacgtggcttcaaagctgctgcactgcacggtgacattcct
cagtctctacgtgagcgtactgttgatcacatcaaacaaggtgttatcgacatcctagtg
gcaactgacgttgttgcacgtggtcttgatgttccacgtatcactcacgtatttaactac
gacatcccattcgatgttgagtcttacatccaccgtatcggtcgtactggccgtgcagga
cgtaaaggcaaagcgatccttctagttcgcactaaccaaatccgcatgcttcgcactatc
gagcgcgtgactaagtcatctatggaagaaatccaacttcctctacgtgaccaagttgca
gaagctcgtctaaacaagctagcggctgaactggaagctgagaaagagcacaaagcacta
gacaagttcgcagagctagtagagaaactacaaacttctctagaaatcgaccctgcgatg
cttgctgcaatgcttcttaagcgtcaacaaggtaaacgtcctctgttctacattggtgaa
gacccaatggttgaagcgattgagcgtgacaagcagcgtcgtaaagaacgccgtgaaggt
ggccgtgaaggcggtcgtagcttcaacaaccaagactgggatacttaccagcttcaagtt
ggtcgcgagcaaggcgttcaagttaaagatatcgttggtgctctagcaaacgaactaggc
ctaggtaaaggttctatcggtgcgatcaagctagcgcaaggtcacacattcgttcagcta
ccaaaagcaatgacttctgaagctgcgagcaaactaagcaaactgcgtatccgtcaacaa
gatgttggtgctgtagtatgtgatttcgatgatttccgcgagtctcgtggtggtcgccgt
gacggtggtcgtcgcgatggcggccgtcgtgaaggtggtttccgtggtaaccgcgaaggt
ggcaaccgtggtggtgagcgtcgtgaaggcggtcgtcgtgaaggtggcttccgtggtaac
cgtgacggcaaccgcgaaggtaaccgtgaaggtggcgaacgtcgtttcgatcgtaaccgt
ggtggtgatcaccgtggtaactaccgtggcgaacgtggtcacggccgtggccgtcgtact
caagacgcataa
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