KEGG   Vibrio parahaemolyticus RIMD 2210633: VPA0845
Entry
VPA0845           CDS       T00120                                 
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
vpa  Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vpa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    VPA0845
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vpa03019]
    VPA0845
Enzymes [BR:vpa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     VPA0845
Messenger RNA biogenesis [BR:vpa03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     VPA0845
SSDB
Motif
Pfam: DEAD Helicase_C ResIII SNF2-rel_dom P-loop_SecA AAA_22 Helicase_RecD AAA_19 Helicase_C_2 ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: BAC62188
UniProt: Q87HW1
LinkDB
Position
2:881054..882319
AA seq 421 aa
MRFIMSVNFADLGIEQQLVETLNNMNIVTPTPVQEKSIPHVLEGKDLLAAAQTGTGKTAA
FGLPIIQAVQQKKRNGTPHALILVPTRELAQQVFDNLTQYAEHTDLRIVCVYGGTSIGVQ
KNKLEEGADILIATPGRLLDHLFNGNVNISKTGVLVLDEADRMLDMGFWPDLQRILRRLP
NDKQIMLFSATFEKRIKTIAYKLMDSPVEVEVSPANTTAETVKQMVYPVDKKRKRELLAY
LIGSRNWQQVLVFTKTKQGSDELAKELKLDGIKAVSINGDKSQGARQRALDEFKQGKVRA
LIATDVAARGLDIQELEQVVNFDMPFKAEDYVHRIGRTGRAGKSGLAVSLMSRDEEYLLR
AIETLLDQRLPQEWLEGFEPSLIEEVEPERDGGGRRKSRSSEKRKLKAKLAIHKNRGKHR
K
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaggtttatcatgtccgttaattttgctgatcttggcattgaacaacagttagtcgaa
acgttgaacaatatgaatattgtgacgccaacgccagtccaagaaaaatcgattccacac
gtactggaaggcaaagatcttcttgcggctgcgcaaacgggtaccggtaaaacggcggca
tttggtttgccgattattcaggcggtacagcaaaagaaacgtaatggcacacctcacgct
ctcatcctagttccaactcgtgaattggcgcagcaagtgtttgacaatttaacgcaatat
gcggaacacacggatctacgtattgtttgtgtgtacggcggtacaagtattggcgtgcaa
aagaacaagttggaagagggcgcggatattcttattgctacgccgggccgattgttagac
cacttgtttaacggcaacgtaaacatttctaaaactggcgtgttggtgcttgatgaagct
gaccgaatgttggacatgggtttttggcctgatctgcaacgcattcttcgtcgactaccg
aatgacaaacaaatcatgctgttttcggcgacgtttgaaaaacgcattaaaaccatcgct
tacaaactgatggattctcctgttgaggtggaagtgtctccagcgaatacaacggcagaa
acggttaagcagatggtgtatccagttgataaaaagcgtaagcgtgagttgctagcgtat
ttaattggctcacgaaactggcaacaagtacttgttttcactaaaaccaaacaaggcagc
gacgagcttgcaaaggagctcaaactggatggtatcaaagcggtttcgattaatggtgat
aaatcgcaaggtgctcgccagcgtgcacttgatgaattcaagcaaggtaaagttcgtgct
ttaattgcgacagatgtggcggctcgcggtctagatattcaagagcttgaacaagtggtg
aactttgatatgccatttaaagccgaagactacgtacatcgtattggtcgtactggccgc
gcgggtaaatccggtttggccgtttcattaatgagccgagatgaagaatatctgcttcgt
gcgatcgaaacgttgttagaccagcgtttgcctcaagaatggctagaaggattcgaacca
agtctaatcgaagaggtagaacctgagcgtgatggtggcggtcgtcgtaagagtcgttcg
tcagaaaagcgcaaactaaaagcaaaactcgcgattcataaaaatcgtggcaagcaccgc
aagtaa

DBGET integrated database retrieval system