Vibrio parahaemolyticus RIMD 2210633: VPA1022
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Entry
VPA1022 CDS
T00120
Name
(GenBank) putative exonuclease SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vpa
Vibrio parahaemolyticus RIMD 2210633
Brite
KEGG Orthology (KO) [BR:
vpa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpa03400
]
VPA1022
DNA repair and recombination proteins [BR:
vpa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
VPA1022
Archaeal homologous recombinant proteins
VPA1022
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
SbcC_Walker_B
AAA_29
AAA_21
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
BAC62365
UniProt:
Q87HE3
LinkDB
All DBs
Position
2:complement(1074208..1077264)
Genome browser
AA seq
1018 aa
AA seq
DB search
MKPIKLTMQAFGPFAKTETIDFEKLGSNALFLINGPTGSGKTSILDAICFALYGETTSNE
RQGIQMRCDLASPQLLTEVILDFSLHGKVYRVTRAPEQEAPKARGEGLTVRKHTASLYEL
GETEKLITSKTTQVKTEITNIIGLNETQFRQVMVLPQGKFRELLLATSKEREEIFGQLFE
TDIYKKIEYALKDKASSISKAKDEFDNQIRGALQVAGVTSEAELTEQRETLSVQFASAQK
REQESLAQLNAVKTEIQKAETLSSEFKKREQAEAALHLHLQQTETISARQLQLDNAKKAS
RIELPYITLQNAAQQVQDLNQKVAVLSQDLKAADDVLKTKEQAFQQAKEQANRVPTLTEQ
QYQLESMKSKLVEKVELDSAIAAGLQQKSEFEETLKKYIVFREKLTQDALQAQKVLEQAR
IDVASIGGVDAEIKQQQRLMSDLQKLGNLNQELSKLDALTSSKQASVTQAKSYYENLQRE
ADALELSWHNAQAAVLALRLQTGEKCPVCGSTEHPQPAQFVGDEVTKEQVQQARHQEREA
QITLNQLSNQLEQHNIAIAQYTQQIEQMVSELGQNANLELQALQASIHQLNERLQHLNAI
NIAQLEQSVNELNQRCVVGEGKINDLQNQMAANESTIKANQQQLAKLSASLDDKYTSLEQ
LENDLTQIHKQIVELNNGLESAQAQLQQAVLAKSNVDSQLTTHQQWLLEANSKLENAKTE
WESALKASAFADEAHFLQSKVSEQQTQTWQQEIDNFKQTKIQLEQTLADLNQALKAVEKP
NLEALNGSLSTAQHSYLEIRNQLDSTRSLFEGLEKVRNEISNLHDKNRKLEEEYKVFGTL
YDVASGKTGSRISLHRFVLGVLLDDVLIQASQRLSLMSKGRYILARKTEGFKGAAGRGLD
LVVEDGYTGKMRDVATLSGGESFMAALALALGLSDVVQSYSGGIRLDTLFIDEGFGSLDP
ESLDLAIQTLVDLQQTGRMIGVISHVSELKEQMALRIDVEPSRFGSTVSVKSQMLISK
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatcaaactcacgatgcaagcctttggtccgtttgcgaaaacagaaactatt
gattttgaaaagcttggaagtaatgctttatttttaattaatggacctactggctcaggt
aaaacctcgatcttagacgcgatttgctttgcgctatatggcgaaaccactagcaatgaa
cgtcaagggatccaaatgcgctgtgatttagcatcgccacagctgctaaccgaagtaatt
ctagatttctctttgcatggcaaagtttaccgagtgactcgcgcgccggagcaagaagct
ccgaaagcccgtggtgagggattgaccgttcgcaaacacacggcgtcattgtatgaattg
ggtgagacagaaaaactcatcaccagcaaaacgacccaagttaaaactgagatcactaat
attatcggtttgaacgaaactcagttccgtcaggttatggtattgcctcaaggtaaattt
cgcgagctgttattagcaacgtctaaagagcgtgaagaaatctttggccagttattcgaa
acggatatctataaaaagattgaatacgccttaaaagacaaagcaagctcgataagcaaa
gcaaaagatgagtttgataaccaaattcgtggcgcgcttcaagttgctggagtgacatca
gaagcggaattaacagaacaacgtgaaacgctgtctgtccaattcgcgtcagcgcaaaag
cgagagcaggaatcgcttgctcagttaaatgccgtgaaaacagaaattcagaaagctgaa
acgttaagcagtgaatttaaaaagcgtgaacaagcagaagctgcgctccatctgcacttg
caacaaactgaaaccatttcggctcgccaactgcagttagataatgcgaaaaaggcgagt
aggattgaactgccttatatcacgctgcaaaatgccgcccagcaagttcaagatttaaac
caaaaggttgccgttctttctcaagacctaaaagccgctgacgacgtcttaaaaacgaag
gaacaagccttccaacaggcgaaagaacaagctaatcgggttcctacgctgacagagcag
caataccaacttgaaagcatgaaaagcaagttggtcgagaaggttgaactggatagtgcc
atcgctgcaggacttcagcagaaatcagaatttgaagaaacgctaaaaaaatacatagtg
tttagggaaaaactgacgcaagacgccctgcaagcgcaaaaagtgttggagcaagctcgc
attgatgtcgcaagtattggtggtgtggatgcagagatcaaacagcagcagcgtttgatg
tcggatcttcaaaagttaggtaatttaaatcaagagctttcaaagttagatgcattgacg
tcaagtaaacaagcctcggtaactcaagccaagtcttattatgaaaaccttcaacgtgaa
gcggatgcgttagagctcagttggcataatgcgcaagcggcagttcttgctcttcgttta
caaactggagagaagtgtcccgtttgtggtagtaccgaacatcctcagcctgctcaattt
gttggtgatgaagtcacaaaagagcaagttcaacaggctcgtcatcaggagcgtgaggct
caaatcacgctgaaccaattgagcaaccagttggaacaacacaatattgcgattgctcaa
tacacgcagcaaattgagcaaatggtttcggagttggggcagaacgcgaacctagagctg
caagcattacaggcatcaattcatcaactcaatgaacgattacagcatttgaacgcaatt
aatattgctcagcttgagcaaagcgtgaacgagttgaatcaacgttgtgtggttggcgaa
ggtaagatcaacgatttgcaaaaccagatggctgcaaatgaatcgacgattaaagcaaat
cagcagcagttagcgaaattgagtgcgtcattagatgataaatacacatcactagagcaa
ctagaaaacgacttgactcagatacacaagcaaattgttgagctgaataacggcctagaa
tctgcgcaagcgcagttacaacaagctgtgctggcgaaatcaaatgtcgatagtcagttg
acgactcaccaacagtggctgttggaagcgaatagtaaactggaaaatgctaaaaccgaa
tgggaaagcgcactaaaagcgagtgcgtttgctgatgaagcgcacttcttacagagtaaa
gtgagtgaacaacaaactcaaacttggcaacaagaaatagataactttaagcagacaaaa
attcagttagaacaaactcttgcggatttaaatcaagctttgaaggcggtcgagaagcct
aatttagaagcacttaacgggagtttaagcactgctcaacattcgtatctagaaattaga
aatcagctggatagcacgcgttcactgtttgaaggcttggaaaaagttcgcaatgaaatt
tctaatctgcacgataaaaaccgtaaattagaggaagagtacaaagttttcggtacgctt
tatgatgtcgccagtggtaaaacgggcagccgtatcagtttacaccgatttgtgttgggg
gttttattggatgatgtgttgattcaagcttctcaacgactgagtttgatgagcaagggt
cgatatattctagcgcgtaaaacagagggttttaagggtgcagcagggcgaggacttgat
ctcgtggtggaagacggttacaccggaaaaatgcgtgatgttgcaacgttgtcgggtgga
gaatccttcatggcagctttagctttggcattaggcttgtctgatgtcgtgcaatcttac
agcggtggaattcgtttagatacgttattcatcgacgaaggctttggtagcttggaccct
gaatctctcgatctggcgattcaaacattggtcgacttgcaacaaacgggccgcatgatt
ggcgtaatttcgcacgtgtctgaactcaaagagcagatggcgttgcgaatcgatgttgaa
ccgtctaggtttggttctaccgtttcggttaaatctcagatgctaatatctaaataa
DBGET
integrated database retrieval system
