KEGG   Vibrio parahaemolyticus RIMD 2210633: VPA1555
Entry
VPA1555           CDS       T00120                                 
Name
(GenBank) flagellar-specific transcription initiation factor sigma, LafS
  KO
K02405  RNA polymerase sigma factor FliA
Organism
vpa  Vibrio parahaemolyticus RIMD 2210633
Pathway
vpa02020  Two-component system
vpa02040  Flagellar assembly
vpa05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vpa00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    VPA1555
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   05111 Biofilm formation - Vibrio cholerae
    VPA1555
  09142 Cell motility
   02040 Flagellar assembly
    VPA1555
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vpa03021]
    VPA1555
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:vpa02035]
    VPA1555
Transcription machinery [BR:vpa03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     VPA1555
Bacterial motility proteins [BR:vpa02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    VPA1555
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4 Sigma70_r3 Sigma70_r4_2 EIAV_Rev
Other DBs
NCBI-ProteinID: BAC62898
UniProt: Q03474
LinkDB
Position
2:1655300..1656028
AA seq 242 aa
MLDMNPQETYTAPEEVNTPSRPIDENALLQRHQVMVKRVVNQLRVHATSHCSIEDMQQIG
LIALVEAGRRYGDIDDTHFPAFAVCRVRGAILDELRRLDWRSRKTRQQAHELNDVTRDLT
RSLGRMPTDSEIIKALGTDEQDYYNRQNAALAGEMQSLDQLMENSTDSHFGGQYDGMEHE
HIRRSLDSALGRLSKRDQLLLTLFYQHELNLHEIALVLDLTPPRICQLHKQALKQLNQLM
SS
NT seq 729 nt   +upstreamnt  +downstreamnt
atgttagacatgaaccctcaagaaacgtacaccgcaccagaggaagtgaacacaccatca
cgcccgattgatgaaaacgcacttttgcaacgtcatcaagtgatggtgaaacgcgtagtt
aaccaacttcgcgttcatgccacttcccattgcagtatcgaagatatgcagcaaattggt
cttatcgcgctggttgaagcaggacgtcgttatggagacattgacgatactcacttcccg
gcatttgcggtttgccgcgtacgtggcgcgatcttagatgaactgcgccgtttagactgg
cgctcacgtaagacacgtcagcaagcccatgagcttaacgacgtcacacgtgacctcacc
cgctcgttaggtcgcatgccaacggactcagaaatcatcaaagctctcggcaccgacgag
caagattattacaaccgtcaaaacgcggcgcttgcaggtgaaatgcaaagtctcgatcaa
ctgatggaaaacagcaccgacagccactttggtgggcaatacgacggcatggagcacgag
cacattcgtcgtagcttagacagcgcactaggccgactgtcaaagcgagatcaattgcta
ctgacgctgttttatcaacacgaactcaatttacacgaaatagccctcgtcttggatctg
acgccacctcgaatttgtcagcttcataaacaagcgctgaaacaactcaaccaattaatg
tcctcttag

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