Vibrio parahaemolyticus BB22OP: VPBB_0301
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Entry
VPBB_0301 CDS
T02409
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
vpb
Vibrio parahaemolyticus BB22OP
Brite
KEGG Orthology (KO) [BR:
vpb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpb03009
]
VPBB_0301
Enzymes [BR:
vpb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VPBB_0301
Ribosome biogenesis [BR:
vpb03009
]
Prokaryotic type
rRNA helicases
VPBB_0301
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Helicase_C_2
AAA_30
AAA_22
adh_short
PRAI
SLED
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AGB08821
LinkDB
All DBs
Position
1:303289..304668
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AA seq
459 aa
AA seq
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MSKQTFDQVGLNPALLETLDSLNYTHMTPIQALSLPAILNQRDVIGQGKTGSGKTAAFGL
GVLSNLNVKRFRVQALVLCPTRELADQVAKEIRTLGRGIHNIKVLTLCGGMPMGPQIGSL
EHGAHILVGTPGRILDHLEKGRINLEELNTLVLDEADRMLEMGFQDALDAIINAAPKQRQ
TLLFSATFPEKIEKIAQRIMKSPEMIKVESTHDTSSIAQYFYKVEGTEARDEALANLLLT
YQPESAVVFCNTKKEVQNVADELHHRGFSVIDIHGDLEQRERDQALVQFANKSVSILVAT
DVAARGLDVDNLDAVFNFELSRDPEVHVHRIGRTGRAGSKGLAFSFFGEKDGLRVARIEE
YLEMDVVPATLPAKSNQQPYQAKMVTINIDGGKKQKVRPGDILGCLTGKNGIPGAQVGKI
HLFPVRSYVAVEKSAAKKALQIISTGKMKGRQFRARLLK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaaacaaacttttgaccaagtaggcctgaacccagcgctactagaaacgctggat
tcattgaactacacccatatgacgccaattcaagcgttaagcttaccggcgattttgaat
cagcgtgacgtaattggtcagggtaaaacgggctcgggtaaaacagctgcgtttggtctt
ggcgtactatcaaatctaaacgtaaaacgatttcgcgttcaggctttggtgctgtgtccg
actcgcgaactggcggatcaagttgctaaagaaattcgaacgctagggcgtggtatccat
aacattaaagtacttacgttgtgcggtggtatgccgatgggaccgcaaattggttcgtta
gagcatggtgcacatatccttgttggtactccggggcgtattctggatcaccttgagaaa
ggccgtattaacttggaagagctgaatacactggtgctggatgaagccgatcgtatgcta
gaaatgggcttccaagacgctttggatgcgattattaatgcggcgcctaaacagcgtcag
acattgctttttagcgccacattcccagagaagatcgagaaaatcgctcagcgtattatg
aaatcgccagagatgatcaaggttgaatcgactcacgatacttccagcattgctcaatac
ttctacaaagtagaaggaactgaagcgcgtgatgaggcgctagccaatcttcttttgact
taccaaccagagtcggcggtggtgttctgtaatacgaagaaagaggttcaaaatgttgcg
gatgaattacaccatcgcggctttagcgtgatcgatattcacggtgatcttgaacagcgt
gaacgtgatcaagcactggtgcaatttgcgaacaagagcgtttctattcttgtggcaacg
gacgtggcggcacgaggtttggatgtggacaatcttgatgctgtgttcaactttgagctg
tctcgtgacccagaagtgcacgtgcaccgtattggccgtactggccgagcaggcagtaaa
ggtttggcgttcagcttctttggtgaaaaagacggtctacgtgttgctcgtatcgaagag
tacttagagatggatgtggtacccgcgaccttgccagcgaaatcaaatcagcagccatac
caagcgaagatggtgaccatcaacattgatggcggcaagaagcaaaaagttcgtcctggc
gatattcttggttgtttgactggcaaaaatggcatcccaggtgcgcaagtgggcaagatt
catttgttccctgtgcgttcttacgttgctgtagaaaagtctgccgcgaagaaagcattg
caaattatcagtacgggtaagatgaaagggcgtcagttccgagcgcgtcttcttaaatag
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